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Query: HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YRYYETRYADCVNGVGNAASPVGAYASSTEWNYDNEVAYGFGYGLSYTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTGKVPGKTSVQIYGQAPYTEGGLEKVAIQLLNFEKSSELAPGASEIVSVKVDLQYIASYDMEHDNGDGTTGTYVLDPGTYYFAAGNGAHDALNNILVLQGADESKMVGTGSAAAAVAQEITEDLISRTAFSVSKTGEKISNQIPYADWNYYQPGEVTYLTRADWAGTFPKTYDQMTLTSEKLISDLNGNYYTIATDDDTSDIKWGENSNLMFYQMFGLDFDDPKWDELLDKMTLEEAQYLATYGGPSIPGVESIGTVETYMTENAGNGVAVNLNASKLast
1 -24.800PF14310.6; Q2TYS6_ASPOR/716-785; Fibronectin type III-like domain  ali follow..  22  1..........................................................................................EIAQLYVQIP----GEGQPLLELRGFDKVA-VPPGETRTVDFNIRRRDLSTWDVAAQK-------WKLSVGQYPVFVGSSS............................................................................................................................................................................................. 70
2 -11.400PF10633.9; Q67M97_SYMTH/263-339; NPCBM-associated, NEW3 domain of alpha-galactosidase  ali follow..  19  1....................................................................AVAGRKNGVTLEVKNTGTTEITGI-NFASTLPPNWTATFSP-------DSIDALAPGESRQVTVEVTPNS-------------------ALAGDYLVTLRARS............................................................................................................................................................................................. 77
3 -9.820PF16116.5; R6Y5S7_9BACT/235-498; Domain of unknown function (DUF4832 topsan)  ali follow..  14  142........................................LGYRIELQEMTAP-------------AVLLAGQANPVEISLINRGFSTLFNEHPVYLVLIDESGKV---CHVALTDANVNDWQPYETGDSSCTPLLHTIST----------------LAKGMYSLGLW................................................................................................................................................................................................ 244
4 -9.490PF07705.11; Q8TPY5_METAC/349-453; CARDB  ali follow..  17  4............................................LGIQDVKVS---------HNGLAKAWNKLNNTVSVTVINNGPENADSFLELYSDG------------TPVESRQVTGLANGATETVDFSWKPE---------------------DIKDYTLKAVVVPGSIISDT...................................................................................................................................................................................... 96
5 -9.440PF05753.14; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB)  ali follow..  7  25..............................................................QILNKYLVEKSDLLVRYTIFNVGSGAATKVRLVDSGFHPEAFDVVGGQPTA----VVDRIAPQTNFTHVLVVRPKAFGYFNF-----TAAEVSYKAVEESETLQLAVSS............................................................................................................................................................................................. 124
6 -9.330PF12690.7; C4L5A1_EXISA/43-141; Intracellular proteinase inhibitor  ali follow..  9  1.............................................................LDTEMAYDASAKTLSATISMTNPNEFNSSQRFQLVVKKGDQTVFDYGSDYMFTESVIEEKWEANDKKVFDEVFPLT--------------------LEPGEYSVEVIGLGQV........................................................................................................................................................................................... 98
7 -9.250PF14796.6; K7IWJ5_NASVI/813-956; Clathrin-adaptor complex-3 beta-1 subunit C-terminal  ali follow..  22  65.........................................GRGLKLERFT-------------RSQHLVSPALVNIELTFANEGT---ETIKDIRVGNKNLATGM-----SLHDFSPIPVLQPNSSLACTIGINFND.............................................................................................................................................................................................................................. 141
8 -8.080PF14874.6; Q4DUQ4_TRYCC/1589-1690; Flagellar-associated PapD-like  ali follow..  14  3.......................................................TLSVMPSVLSFGRVIRGNRYALPVVFTNTSTVP----CRYRVTLP------TECKDILRVHYPRHFLAPGLTVMAQVEISGTQPLGAMSFS--------NVTHEGGLIPVKVEIET............................................................................................................................................................................................. 101
9 -7.500PF01345.18; Q9RWI2_DEIRA/209-325; Domain of unknown function DUF11 topsan  ali follow..  15  4..............................................................TFTPAEVRAGGETTVNLTLTNNGGDSREAVLTVFVSGSARLGGNARDAVIEYT--RTSSVPAGGSLQLSFTLRAPR.............................................................................................................................................................................................................................. 107
10 -7.410PF18368.1; F7W395_SORMK/760-869; Exo-beta-D-glucosaminidase Ig-fold domain  ali follow..  14  11.............................................DYTALNKLAAANVSLAARSRGHGPKGHSESAMQVTLENHSSVDGKDVLPVTWDDNYLT------------------LWPREKITVKVRPF................................................................................................................................................................................................................................. 94
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.