current user: public
If you have questions about the server, please let us know.

Query: HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst LEDGDFVKLSNLTIGYTLPIRNNKYMKSLRVYVSGNNLFCITGYSGLDPELDISNVQAPGVEYRDTYPTTRSFTFGVNIGFLast
1 -8.000PF07055.12; C6CTR2_PAESJ/323-385; Enoyl reductase FAD binding domain  ali follow..  10  1VDEKGLIRMDDWEMREDV----QAAVDKLWSEITTENVYELSDLEGYRREFQLFGFETDGIDY.................. 60
2 -7.130PF17484.2; M9X4V7_MANHA/45-175; N-Lobe handle Tf-binding protein B  ali follow..  20  92........FNFVRSGYVLHSGAKPEIKPKEILRTGAHGYVY--YLGIEPA............................... 131
3 -6.530PF07437.11; YFAZ_ECOLI/1-180; YfaZ precursor  ali follow..  19  140...............................YTIMRPVSIEAGYRYLNLSGK---------DGNRDNAVADGPYVGVNASF 180
4 -6.100PF18469.1; W6MIR9_9ASCO/54-188; Pleckstrin homology domain  ali follow..  11  4.DFHIVLQIPELS--LQSPIRKKLNLIFATPKNAKSPALVLSKGVDTQPEIMLDNLSSGNVTFAAILRVPE.......... 71
5 -5.910PF05557.13; G3PW04_GASAC/52-714; Mitotic checkpoint protein  ali follow..  11  572.KIQEFRTVCYVLTGYQIDITTENQYRLTSLYAHMDDSLLFKKMGSNGAKMQLGEMVALHLHHQKSLP---AFLSAVTLDL 658
6 -5.800PF12094.8; G4QGK9_GLANF/10-436; Protein of unknown function (DUF3570 topsan)  ali follow..  11  304.TDDWDIQSHTIDSRLRYNLTETDYIQHVRYYQQSEADFALPSVASADYRLGEMTAITVGLKYGHKMNNGHEWGVRAE... 390
7 -5.720PF07751.11; D3IEF7_9BACT/32-233; Abi-like protein  ali follow..  19  3LYNISYYRLR----AYTYPFQNNGEGANHEFLRKDISFQDVIDLYCFDRRL.............................. 49
8 -5.520PF02559.16; W8F9N8_9BACT/486-581; CarD-like/TRCF domain  ali follow..  23  15...ARFAGLTQVEIDRLQEAIRLVYRDDDVLTVSIHALHKIAKYSGAEGT............................... 62
9 -5.490PF17893.1; A0A095Y326_9ACTO/834-923; CRISPR-associated endonuclease Cas9 beta-hairpin domain  ali follow..  13  3VHDDTVRKFIHAKLGEALSVAMIDRAETPALWTALTRLPDFDPKEGLSREIYIHGRKITADEQLNFFNSPSA......... 78
10 -5.390PF06727.11; G4SX63_META2/42-373; Protein of unknown function (DUF1207 topsan)  ali follow..  15  274.EENKWNTDVSARAGVEFENLQVLG-RKLQLLVE---------FNGYSPSGQFYND------------KVEYVGIGAHYHF 332
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.