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Query: HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKEHKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNLYADRTLWNTMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHNGILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVTKLLKYANPLSENGGESLMRGQITELSFGSSCWQCSSLast
1 -23.400PF17194.4; K9SQ68_9CYAN/5-97; Transcriptional regulator, AbiEi antitoxin N-terminal domain  ali follow..  8  6....KKLLDQYKPGTVCLASWLEELGISYDLQKRYRRSGWLSSIGTGAFVRPG-----DEVTWQGGLYALQTQANLPIHAGAITALAMQDM.................................................................................................................................... 87
2 -13.100PF09407.10; B9M298_GEODF/67-209; AbiEi antitoxin C-terminal domain  ali follow..  16  12......................................................................MSHLGELYYAGLLTAAEHHGA-AHHRPQSFQVIVPRTRTGITCGGVRVDFIGRKNVAGMPTQYLRVSTPEVTAFDLAGYPHAGGLDNVATVLSEEKMDPAKLVSIADLSPISWQRLGYLLEL............................... 143
3 -7.310PF13749.6; D4JAQ7_9FIRM/299-384; Putative ATP-dependent DNA helicase recG C-terminal  ali follow..  8  9......................................................................................................................................................FDDRIVVESPGRLPGLVKAGNIRHTHFSRNPKIAEFLRDYNFV----KEYGEGVDRMCLEAAGLQSPEYRVNA 79
4 -7.270PF07726.11; Q87G66_VIBPA/36-166; ATPase family associated with various cellular activities (AAA)  ali follow..  14  39................................................................................................................................ADLTGTDIFRPETGEFTFQSGPIFNSLILADEINRAPAKVQAAMLEAMAEKQVTAGRHTYALPFLVMATQNPIEQ-------EGTYPLPEAQLD. 127
5 -7.010PF11459.8; B3EPF1_CHLPB/99-249; Transcriptional regulator, AbiEi antitoxin, Type IV TA system  ali follow..  13  51.....................................................................................................................................IRISGAERAMLECLLTPESIGLVECYQMLENLATLRPKVLQELLERCRSVKVKRLFLFMGEKAGHKWQKRLGTRSIVTGGVFVPKFAL.. 148
6 -6.980PF09543.10; Q1CVP2_MYXXD/3-120; Protein of unknown function (DUF2379 topsan)  ali follow..  16  20...................................................................................................................................IPLELTDDVRSL--LRRTAREVAISDADTALQTQAGATELLREAMRRIKDGSWRLMRALHRMYQHKRAGDFDSARQEMREV------LAEE. 102
7 -6.600PF14790.6; DAPD_NITSB/6-168; Tetrahydrodipicolinate N-succinyltransferase N-terminal  ali follow..  8  58.............................................................................................................................QKALHETGKLLNDESEAVYDVTKNFVAEALSYIEEAIGDAHKNVQVIKYLSTLDEEELANFKIVFLFEDAAPKSVEAVYLKLYALSTGKAALR..... 154
8 -6.510PF13338.6; D2NT20_ROTMD/74-122; Transcriptional regulator, AbiEi antitoxin  ali follow..  8  13...............VLNSQMLNLRGIGPKRIRKLVAEGSLQRIQRGAYI............................................................................................................................................................................. 47
9 -5.750PF12482.8; A1W5N1_ACISJ/100-191; Phage integrase protein  ali follow..  3  23...........................................................................................................................................................RLVDVLHAAGIRTLADLTLRVPRRRRGPAGARHIEAFFAQHPALTERARALITVNQAQELIP...... 92
10 -5.730PF14592.6; T2KLV7_9FLAO/30-455; Chondroitinase B  ali follow..  11  3...........................NAKELDQAIKAGDHLVMANGVWTDIIIKFKGVGTEAQPIVLEA--ETPGKVFIEGQSRLRLSG------------------------------------EYLEVSGLYFRNGFTPKSTIIDFRTDNESVANHSKITNCVIE....................................................... 108
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.