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Query: HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VKVEVHYFDELLERIRDIRASEKRVYRKVKEIFALSVDYDSKSQVAQSFFKSVQNKLEYAATGHTAPELIAKRADASKDNMGLTSFKGVKVRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRFNGREVLENFGTVKREVAEKLALEQYEQYDTHRRALEAADDVDELTADVKRLKRLast
1 -43.300PF13310.6; L0KVS2_METHD/69-326; Virulence protein RhuM family  ali follow..  43  74..FGRDYFEELLERIREIRASERRFYQKITDIYTLSADYDKNAPQTKEFFATVQNKLHWAITGKTAAEIIYDSADATKLHMGLTNWKHAPILKSDVSVAKNYLGEAHIRELNRLVSAYLDLAENRAQRHILMKMQEWSEFLHNFLELSSYPILKDKGRVSALEAKLKAEQEYEEYRVTQDKNY................. 257
2 -6.790PF06570.11; Q8DXY5_STRA5/5-213; Protein of unknown function (DUF1129 topsan)  ali follow..  10  3TKKNQEFVHIATNQLLADGKSDAEIKAILEEHLPEIIDNQKKGITARSLLGAPTTWAASFTERPEDKARVSVQKNTNPWLMWLDT................................................................................................................... 87
3 -6.100PF12057.8; K7JNU2_NASVI/339-452; BCL2-associated athanogene 6  ali follow..  16  1.......MAELLERLVNTQDRLRPYIERYRVLMLADPSLTPGSAENQRIVDGVSECLHYLSHACHALSDIIVDMGQQPP......................................................................................................................... 77
4 -5.810PF01638.17; YYBR_BACSU/22-112; HxlR-like helix-turn-helix  ali follow..  18  14MIDGKKRFNEFRRICPSI--TQRMLTLQLREL-------EADGIVHREVYHQVPPKVEYSLT.......................................................................................................................................... 66
5 -5.780PF05554.11; Q1AES1_9RHAB/1-122; Viral hemorrhagic septicemia virus non-virion protein  ali follow..  24  46.....DFFETTLSRVKDLRTSTRLPYLHVLDMRISLLE.................................................................................................................................................................. 79
6 -5.750PF18208.1; Q033J2_LACP3/276-384; Nicking enzyme C-terminal middle helical domain  ali follow..  1.....................................................................................................HFSFNEKKVVKELSHELKTYISLESLDDKRRMLFNWKNST------QQESSLKKADELLNKVVDRTTKKLYPELDFEQTTAAERRELIKETDSEQTV.. 109
7 -5.640PF15389.6; I3JX15_ORENI/2-111; Domain of unknown function (DUF4612 topsan)  ali follow..  21  83................HSSESQQEFFRMLDEKIEKGRDYCSEEE............................................................................................................................................................ 110
8 -5.520PF18174.1; A0A0A2G6U1_9PORP/1-59; CCDC81-like prokaryotic HU domain 1  ali follow..  11  1.....................................................................................................................................MGRLSNNIDTLLALHDCVIIPSFGAIIKEQQPPFYDREVGVL......................... 42
9 -5.410PF16689.5; I3JK26_ORENI/6-57; Coiled-coil N-terminus of APC, dimerisation domain  ali follow..  16  3.......YDQLAHQVEALRKENSHLRRELEDNSNHLSKLETETFGMKEVLKQLQSKL............................................................................................................................................... 52
10 -5.350PF17398.2; Q989P6_RHILO/21-167; Nodulation protein NolB  ali follow..  19  105...GRHDFETMIAGLRDM-------YNGVTQVALVSKGVSGITSSVNKLLKE.................................................................................................................................................... 146

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.