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Query: HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NQDSWQKWNAEYEFRYQLMHGLISLRAALGMDYCDSRAADYHHTHCNLYAVVNAQAAYKCMALTFNLRTHRPTLYGETLALGEDLHDIALTYFKKRFSLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKGNKLast
1 -20.300PF14905.6; E6X881_CELAD/375-789; Outer membrane protein beta-barrel family  ali follow..  12  249NFDNTTAYGMEVSLNYKPLT-WWSINGSFDLFSQTQRGIAIEEEVENTAWNFRMNNSLKSFQVFGFYRGANKNIQFDVKSMYFINTGARYSFAEGKGTLSLNFNDVFNTMRFAFDSTRP----YASTGQFNWESRTVYAGLSY............................. 391
2 -12.300PF16946.5; B8K3G3_9VIBR/48-336; OMPG-porin 1 family  ali follow..  150GTGEFPYWEVEPGFSYK-INDNTGAWLNFRYQEGQWKKDGYSETETEWIIKPGIWHNFGKLSASLWGEKSVDSTGAHAWTEDYSKLGVSANYLSKSWRMFGEA-----------SYKKIDFASGPQRDEFDGYIPLFILGVNYSF........................... 289
3 -11.700PF00593.24; Q8P343_XANCP/286-782; TonB dependent receptor  ali follow..  333NVGSVSSRGGELTVIWKPTSY-LQWYNSASINRSTYDDNYVQNGVTKRMLASEIAFNYAGWNVNLRGKYTGETYTNDQGFGGYTSFDAGAGYE-QSLKLSLNVTNLTDKRYASNTAFANSDPNGRQLAFHASAPRQVFLTLDAK............................ 497
4 -11.700PF09381.10; D1AL54_SEBTE/71-353; Outer membrane protein G (OmpG)  ali follow..  11  103TTTNNRWLNIQPDWRYN-FTSNLSYEGWLGLYSMFNDAQENGYSDKELETESGLKYKFNDISVRLNYYLDRGWNLGGPTENSFNNQQIRGYV---PMNFAFFGEKTTTITPYFRQGFINKSWNAGANQANNEIDTRLGLRIDQQLP.......................... 245
5 -10.900PF01278.20; COLY_YERPE/30-312; Omptin family  ali follow..  94ATNVNHANEYDLNVKGWLLDENYKAGITAGYQETRFSVIGYNQRFSMPYIGLAGQYRINDFELNALFKFRDLTFREKTSGSRYYGTVINAGYYTPNAKVFAEFT---GGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF........................... 283
6 -10.200PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  44..GSDDLNGINVKYRYE-FTDTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRWFVSYARVSSFAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTYSAGVQINPTENIVVD-------LAYEASGRGDWRTEAFIVGTGYRF........................... 199
7 -9.860PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain  ali follow..  102...........................................DGLDVYGKAGVALVRSDYKFYEDANGTRDHKKGRHTARASGLFAVGAEYALPELAVRLEYQWLTRVGKYRPQDKPNTAINYNPWI------GCINAGISYRFGQGE....................... 202
8 -9.710PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan)  ali follow..  23NALYWATTTPNIGVEAS-VGKKHTVQLFYGLNPWKQSGGDFCQSFNGWFIGAHLMGGQFNMGSVDLPFGVFNELEDHRYEGWYAGGGITAGYQSKHWNIEASLGVGYDYIQYDKFRCGECGERLKSDHTNYFGPTKLALSVLYIF........................... 185
9 -9.580PF07437.11; YFAZ_ECOLI/1-180; YfaZ precursor  ali follow..  11  56...DDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGD---EGYAAAVGGGLQWKINSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIM-RPVSIEAGYRYL---------------LSGKDGNRDNAVADGPYVGVNASF........................... 180
10 -9.050PF13729.6; F7YS53_VIBA7/48-300; F plasmid transfer operon, TraF, protein  ali follow..  138.....SEFGLALAKIYNIRGQQFSFGITPKIQQLRTYKQNVSVK-----------------------EFDLADYDKSETNDNAFNLDLGAVWLINDFRVGVAVKDLFAQE-----------LKTIDGLSSYDLDTQVTISGGYVTEF......................... 245

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Godzik A. Surface map comparison: studying function diversity of homologous proteins. J Mol Biol. 2001 Jun 8;309(3):793-806.