FFAS03 results for HGC00579

Query: HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170`
#	Score	Template	Links and tools	%id	First	`NQDSWQKWNAEYEFRYQLMHGLISLRAALGMDYCDSRAADYHHTHCNLYAVVNAQAAYKCMALTFNLRTHRPTLYGETLALGEDLHDIALTYFKKRFSLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKGNK`	Last
1	-20.300	`PF14905.6; E6X881_CELAD/375-789; Outer membrane protein beta-barrel family`	`ali follow..`	12	249	`NFDNTTAYGMEVSLNYKPLT-WWSINGSFDLFSQTQRGIAIEEEVENTAWNFRMNNSLKSFQVFGFYRGANKNIQFDVKSMYFINTGARYSFAEGKGTLSLNFNDVFNTMRFAFDSTRP----YASTGQFNWESRTVYAGLSY.............................`	391
2	-12.300	`PF16946.5; B8K3G3_9VIBR/48-336; OMPG-porin 1 family`	`ali follow..`	7	150	`GTGEFPYWEVEPGFSYK-INDNTGAWLNFRYQEGQWKKDGYSETETEWIIKPGIWHNFGKLSASLWGEKSVDSTGAHAWTEDYSKLGVSANYLSKSWRMFGEA-----------SYKKIDFASGPQRDEFDGYIPLFILGVNYSF...........................`	289
3	-11.700	`PF00593.24; Q8P343_XANCP/286-782; TonB dependent receptor`	`ali follow..`	9	333	`NVGSVSSRGGELTVIWKPTSY-LQWYNSASINRSTYDDNYVQNGVTKRMLASEIAFNYAGWNVNLRGKYTGETYTNDQGFGGYTSFDAGAGYE-QSLKLSLNVTNLTDKRYASNTAFANSDPNGRQLAFHASAPRQVFLTLDAK............................`	497
4	-11.700	`PF09381.10; D1AL54_SEBTE/71-353; Outer membrane protein G (OmpG)`	`ali follow..`	11	103	`TTTNNRWLNIQPDWRYN-FTSNLSYEGWLGLYSMFNDAQENGYSDKELETESGLKYKFNDISVRLNYYLDRGWNLGGPTENSFNNQQIRGYV---PMNFAFFGEKTTTITPYFRQGFINKSWNAGANQANNEIDTRLGLRIDQQLP..........................`	245
5	-10.900	`PF01278.20; COLY_YERPE/30-312; Omptin family`	`ali follow..`	8	94	`ATNVNHANEYDLNVKGWLLDENYKAGITAGYQETRFSVIGYNQRFSMPYIGLAGQYRINDFELNALFKFRDLTFREKTSGSRYYGTVINAGYYTPNAKVFAEFT---GGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF...........................`	283
6	-10.200	`PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein`	`ali follow..`	6	44	`..GSDDLNGINVKYRYE-FTDTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRWFVSYARVSSFAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTYSAGVQINPTENIVVD-------LAYEASGRGDWRTEAFIVGTGYRF...........................`	199
7	-9.860	`PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain`	`ali follow..`	9	102	`...........................................DGLDVYGKAGVALVRSDYKFYEDANGTRDHKKGRHTARASGLFAVGAEYALPELAVRLEYQWLTRVGKYRPQDKPNTAINYNPWI------GCINAGISYRFGQGE.......................`	202
8	-9.710	`PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan)`	`ali follow..`	8	23	`NALYWATTTPNIGVEAS-VGKKHTVQLFYGLNPWKQSGGDFCQSFNGWFIGAHLMGGQFNMGSVDLPFGVFNELEDHRYEGWYAGGGITAGYQSKHWNIEASLGVGYDYIQYDKFRCGECGERLKSDHTNYFGPTKLALSVLYIF...........................`	185
9	-9.580	`PF07437.11; YFAZ_ECOLI/1-180; YfaZ precursor`	`ali follow..`	11	56	`...DDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGD---EGYAAAVGGGLQWKINSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIM-RPVSIEAGYRYL---------------LSGKDGNRDNAVADGPYVGVNASF...........................`	180
10	-9.050	`PF13729.6; F7YS53_VIBA7/48-300; F plasmid transfer operon, TraF, protein`	`ali follow..`	7	138	`.....SEFGLALAKIYNIRGQQFSFGITPKIQQLRTYKQNVSVK-----------------------EFDLADYDKSETNDNAFNLDLGAVWLINDFRVGVAVKDLFAQE-----------LKTIDGLSSYDLDTQVTISGGYVTEF.........................`	245

FFAS is supported by the NIH grant R01-GM087218-01

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