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current user: public |
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Query: HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . | |||||||
# | Score | Template | Links and tools | %id | First | MFEYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIGKALGALYYFLTGFVATS | Last |
1 | -58.800 | PF13782.6; R5EV98_9CLOT/28-140; Stage V sporulation protein AB | ali follow.. | 38 | 1 | .............................LAIIGVFVRLMGTGTRKHIFLYETVIILGGVLGNILDIYEFPIYMGP----------YIGTLFICVFGLSVGIFVGCLVMSLAETLKTLPVISRRIHLAVGLQYLIFALAAGKMAGSLVYFW....... | 113 |
2 | -8.100 | PF08560.10; G0NUG4_CAEBE/10-151; Protein of unknown function (DUF1757 topsan) | ali follow.. | 16 | 69 | ...........AVIGTALGPVLTCMKLRGLCDLILYGKCYSLRFDEDALRRDRAAVFSAAAGYLSS---------------------------GAPGFVIGLDVSFLFSKL............................................... | 141 |
3 | -7.770 | PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1) | ali follow.. | 13 | 32 | LLLALLFWLYIVMSDWTGGALLVLYSFALMLIIIIL----------FIFRRDLLCPLGALCILLLMITLLLIALWNLHGQALFLG-----IVLFIFGLVLGIWIYLLEMLWRLGATIWQLLAFFLAFFLDLILLIIALYLQQNWWTLLVDLLWLLL.. | 176 |
4 | -6.920 | PF05758.12; TI214_VITVI/21-949; Ycf1 | ali follow.. | 13 | 2 | ..........VVVVGLYYG---------FLTTFSIGPRAQVMEEGEEGTEKKVSAITGFITGQLMMFISIYYPLHLALGRPHTITVLALPYLLFHF--IQCVFLNNL---IFQLLNHFSMLARLVNI-NNKMLFVTSSFVGWLIGHILFMKW...... | 167 |
5 | -6.780 | PF11200.8; A7AQJ9_BABBO/2-370; Protein of unknown function (DUF2981 topsan) | ali follow.. | 12 | 1 | ................SQGLFYIAGISLYSVIHYLHPSLTQLAWLLFGTNAISAVLMGALKRNIVM-----------------------ECVYLVFYAISLFLIFLTVLDMAELVHLLP....................................... | 88 |
6 | -6.780 | PF15744.5; G1SII7_RABIT/10-368; Uncharacterized protein family UPF0492 topsan | ali follow.. | 17 | 1 | .......................CGNFAVLVDLHISPQFSEQKKEEVCLLLKETID--SRVKEYLEVRKQHKPSSPEFTRSNPLSLKGYGFQITAYFLKRGIRLRCIRGSRNSELRVFPVCVSQLAFNHDLLVSQKEELTERALHRVSDYF....... | 138 |
7 | -6.430 | PF17410.2; A0A024VXK5_PLAFA/31-305; Subtelomeric Variable Open Reading frame | ali follow.. | 17 | 147 | ..............RCTRGIYSCSILSAFLTLIGLA--LAKKAAIASLVNYGTVFQNCVSSSSLFHIFDSVSLTAALKATSTCASAAGGDVITPAVGAAIGTFP-LVLLILAVVLIILYIWLYRRR................................ | 261 |
8 | -6.240 | PF13108.6; B8FBZ1_DESAA/2-104; Protein of unknown function (DUF3969 topsan) | ali follow.. | 24 | 10 | ..........................................................................................VLVATIGLCEALLNDCMTVDEASDFLFIPHTMKIVGYDEELVYII....................... | 54 |
9 | -6.150 | PF11990.8; Q3JDD4_NITOC/4-116; Protein of unknown function (DUF3487 topsan) | ali follow.. | 25 | 5 | ..............................................................................................................LADRLNAEPAIFKGCSSSELGMIVGFAIVVWLPLSLLLAWLLG..... | 47 |
10 | -6.110 | PF13974.6; D8MT40_ERWBE/15-89; YebO-like protein | ali follow.. | 18 | 3 | .........................................................................................SVALVIVGLIAWYFVNRASVKASQQVQLLEALLEEQKRQNVLLRRLTDSVAGK................ | 55 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5. |