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Query: HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFEYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIGKALGALYYFLTGFVATSLast
1 -58.800PF13782.6; R5EV98_9CLOT/28-140; Stage V sporulation protein AB  ali follow..  38  1.............................LAIIGVFVRLMGTGTRKHIFLYETVIILGGVLGNILDIYEFPIYMGP----------YIGTLFICVFGLSVGIFVGCLVMSLAETLKTLPVISRRIHLAVGLQYLIFALAAGKMAGSLVYFW....... 113
2 -8.100PF08560.10; G0NUG4_CAEBE/10-151; Protein of unknown function (DUF1757 topsan)  ali follow..  16  69...........AVIGTALGPVLTCMKLRGLCDLILYGKCYSLRFDEDALRRDRAAVFSAAAGYLSS---------------------------GAPGFVIGLDVSFLFSKL............................................... 141
3 -7.770PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  13  32LLLALLFWLYIVMSDWTGGALLVLYSFALMLIIIIL----------FIFRRDLLCPLGALCILLLMITLLLIALWNLHGQALFLG-----IVLFIFGLVLGIWIYLLEMLWRLGATIWQLLAFFLAFFLDLILLIIALYLQQNWWTLLVDLLWLLL.. 176
4 -6.920PF05758.12; TI214_VITVI/21-949; Ycf1  ali follow..  13  2..........VVVVGLYYG---------FLTTFSIGPRAQVMEEGEEGTEKKVSAITGFITGQLMMFISIYYPLHLALGRPHTITVLALPYLLFHF--IQCVFLNNL---IFQLLNHFSMLARLVNI-NNKMLFVTSSFVGWLIGHILFMKW...... 167
5 -6.780PF11200.8; A7AQJ9_BABBO/2-370; Protein of unknown function (DUF2981 topsan)  ali follow..  12  1................SQGLFYIAGISLYSVIHYLHPSLTQLAWLLFGTNAISAVLMGALKRNIVM-----------------------ECVYLVFYAISLFLIFLTVLDMAELVHLLP....................................... 88
6 -6.780PF15744.5; G1SII7_RABIT/10-368; Uncharacterized protein family UPF0492 topsan  ali follow..  17  1.......................CGNFAVLVDLHISPQFSEQKKEEVCLLLKETID--SRVKEYLEVRKQHKPSSPEFTRSNPLSLKGYGFQITAYFLKRGIRLRCIRGSRNSELRVFPVCVSQLAFNHDLLVSQKEELTERALHRVSDYF....... 138
7 -6.430PF17410.2; A0A024VXK5_PLAFA/31-305; Subtelomeric Variable Open Reading frame  ali follow..  17  147..............RCTRGIYSCSILSAFLTLIGLA--LAKKAAIASLVNYGTVFQNCVSSSSLFHIFDSVSLTAALKATSTCASAAGGDVITPAVGAAIGTFP-LVLLILAVVLIILYIWLYRRR................................ 261
8 -6.240PF13108.6; B8FBZ1_DESAA/2-104; Protein of unknown function (DUF3969 topsan)  ali follow..  24  10..........................................................................................VLVATIGLCEALLNDCMTVDEASDFLFIPHTMKIVGYDEELVYII....................... 54
9 -6.150PF11990.8; Q3JDD4_NITOC/4-116; Protein of unknown function (DUF3487 topsan)  ali follow..  25  5..............................................................................................................LADRLNAEPAIFKGCSSSELGMIVGFAIVVWLPLSLLLAWLLG..... 47
10 -6.110PF13974.6; D8MT40_ERWBE/15-89; YebO-like protein  ali follow..  18  3.........................................................................................SVALVIVGLIAWYFVNRASVKASQQVQLLEALLEEQKRQNVLLRRLTDSVAGK................ 55

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.