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Query: HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPYRLLPNTDQARIRALKTAVVKGDMCDVYDLPVSLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLYISHFIQVLNLAVIRMEIKESHKALYGLPVDNFSVPDLSSEASLAEWGQKIIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKCRDYGLIIIIGPEKNRIRRFFKICLSIHIPIFFWKSLQKITFRYGTCPCCRCDAYLYALast
1 -7.550PF14799.6; A0A087ZZE2_APIME/46-146; FAM195 family  ali follow..  14  13......................................................................................................................................................................KSKFSSQRHQMQEVITPQHEELIKFVYESWNQVNTRQRSESSDGSDCSEPSSPNTIVYYNDGEPNDT------LQDFKPF-WWRLFNNIT................. 101
2 -7.010PF05535.12; Q27GT6_CAEEL/51-128; Chromadorea ALT protein  ali follow..  17  1...........................................................................................................................................................................................................................GGHFVRTAGIGMPCETDQDCIHNMEPN--WCNSERNGYQW-TTAGCHCDMKLKS 52
3 -6.980PF11793.8; FANCL_MOUSE/303-371; FANCL C-terminal domain  ali follow..  20  4.........................................................................................................................................................................................................................DCGICYARHLNGADQVCNNPQCGQPFHELYEWTSRQSFNVFFGDCPYCS....... 61
4 -6.670PF00103.20; PR8A5_RAT/17-238; Somatotropin hormone family  ali follow..  28...........................................PLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQF---ADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGF------------MDQPLFHLVIELSAMEGV---PETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQIL--------------NCLITGKDC........... 222
5 -6.220PF13790.6; D5E0C1_BACMQ/1-37; SR1 protein  ali follow..  26  5.............................................................................................................................................................................................................................................VCQTCNCTIDHFED-EKVTRLYSTCKSGECQ..... 34
6 -6.000PF16888.5; Q5WD66_BACSK/7-124; Domain of unknown function (DUF5082 topsan)  ali follow..  8..........................................................................................................VGSLRGEIASIQQDIRRLQEAKSTLMEQQVSFHHEKAQLQEPGLTAGVWHGNEANDHDTKRSSLETSYRASEDQLEEIISSIERKINLLRSDIQHAHTLIDVKQSQVAMFK........................................................ 118
7 -5.840PF07339.12; YUBH_ECOLI/74-174; Protein of unknown function (DUF1472 topsan)  ali follow..  17  37..............................................................................................................................................................................................................AVTRSLLPVCRDFPVVHPLRFRGLTLQLPSAVCVRLRLPL---RLIARLLWRHGTARCRGCE..... 101
8 -5.590PF09174.10; U4LAW3_PYROM/25-204; Maf1 regulator  ali follow..  15  70.................................................................................................................................................ARKTFAYMIATLNASHPDYDFSSVLRPSDFRREKNLRQVINTFNTTLFNLGVKSLPRIWDIIDEEMDLAACG----VYSYQPQDVADDPYGE-LLWSNIYFFFSKERKRVCYLY.............. 180
9 -5.560PF02813.14; POL_RSVSA/2-87; Retroviral M domain  ali follow..  13  2......................................................................................................................................................AVIKVISSACKTYCGKISPSKKEIGAMLSLLQKLMSPSDLYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAARE.......................................... 85
10 -5.540PF04871.13; GOGC6_ARATH/791-914; Uso1 / p115 like vesicle tethering protein, C terminal region  ali follow..  21  1..............................................................................................AKIESEASSNKNMAAKEFDLKSLSDAYNSLEQANYHLEQEVKSLKGGESPMQFPDIEAIKEE-DELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLEDIGDESEA........................................................................ 117

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.