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Query: HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKLVKLILLCLIAYPIISIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENLKLFYRNLast
1 -13.500PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  8  1MNKI---LKTMALLAVPATVAVSCKDDGMDVKFTDKGPEMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAKYGTYDAAIFVPLLKDIPDGTAEITFTAQNTGLGIT.......................................................... 122
2 -11.300PF16383.5; R5CWT1_9BACT/1-176; Domain of unknown function  ali follow..  9  1MKKLRRKAYALMSLAAGVLLFASCAQD-------------------GFDEESFDSGVYNTQLEAPSTDDIQITASADGTQQTISWPVVYGAGGYHAILTNTTAGEV-LIDSVYDGTSFAVARVEDNNYELSLEVLGNEERNNTGCDPVIKTFNTFAVAFATI.... 146
3 -10.900PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  7  1MKK---KLLFILSLTFIGISCFACLDDET--------------YVTQKKTNYPLTAFAVAVNNVQTGTTSYYHGKIDQTTHKIEIGTIENANDYTLMDGASISPDPATFIQNWQKEQKVVTTANNQSTTYTIV................................. 123
4 -9.930PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan)  ali follow..  8  1.........IFSFLTAAGLLFAGCHQPDE-SRNGINSVTAQFVKNNSEGAAEFYGEFKGYPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDDNVTVDPAVLYMNLNEDNYIVTDQLKQKKVYKVRGVKSKACLLEELSLPSQGLNDQETKEVSL.... 163
5 -8.900PF07127.11; A7KH99_MEDTR/1-52; Late nodulin protein  ali follow..  15  1MAKFSMFVYALINFLSLFLVETACVSDDDCPKVIKPLV................................................................................................................................ 43
6 -8.000PF06607.11; A0A024R0B1_HUMAN/1-97; Prokineticin  ali follow..  17  1MRGATRVSIMLLLVTVSDCAVITCERDVQCGAGT.................................................................................................................................... 36
7 -7.830PF03843.13; Q9KQL1_VIBCH/34-187; Outer membrane lipoprotein Slp family  ali follow..  10  1....................LSACASLPPELGNPDDKSVVTQYSAWLERDPATQSPVVVANISNQKDRTRVELVNLPIDSAGRPNIHQEPQGRFVAYVPG----FLDPITYGEGRLLTLY----GTTAPSEQGKVGDYEHTYPVMNAQGYHL.............. 128
8 -7.380PF14466.6; R6Y7E1_9BACT/10-135; PLAT/LH2 and C2-like Ca2+-binding lipoprotein  ali follow..  11  2...........IVALFLGLILVSCSDDDDQGGVIDTGI-HKIVVEQSGDIDAFELGLVFGAVNTTSGPTKLYDEDGKYLGESHSVTRMEDA-------KVSCQTGDDAFFMTCAGSVTSTSDVSGKKLKVLV-TAYIDGKEVNQL..................... 126
9 -7.280PF09044.10; A1CIY3_ASPCL/12-134; Kp4  ali follow..  8  1........IAFSLATSSSALGINCRGSANCNTFGDNQVAAQLKHAIDGID-----------------SNRWYQNGQHIACIGTVAPITGKGGFCAFLQKTGGTNGAVIKNLAHYIPEH---KVCGSV-----YYYPQGNNNVDDGELTFNYVD............. 123
10 -7.020PF05423.13; Q740V1_MYCPA/1-138; Mycobacterium membrane protein  ali follow..  10  1MKRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSY-------DTRQQDTKPFNPKHVKYEVFGPAGAMADISEPQHINGVELPISTTLPSIVGNVVAQGNSDSLGCRILVERISHELNAFTYC.......................................... 134
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.