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Query: PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis], from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFRLast
1 -51.000PF13498.6; A6KY66_BACV8/2-218; Domain of unknown function (DUF4122 topsan)  ali follow..  11  7SIRFGCTAYLLYKVWKQKERIGK----------------CDLLYTPRNRPQAEKDNGEPGNAQDVMGATRFVYLDENAGKTVAPYMSQQLETGSDFIGADK--------------DIPEDEVECKLPEEMRMLKEEQEELDSRSPETEAIAPMVTPADLLNVGDVLLNLNSDENKSYRAAMTLHSIRETDMFELFSSQVEN---KKLIEELMGKYVDKEGNALPLKRER----KESKHVTDWR 217
2 -7.890PF04931.13; K2SXE2_MACPH/89-879; DNA polymerase phi  ali follow..  11  630.............................................................................KKESMSGQQDLFDQQGSEDGEDASEDDEDEQDSDVEMVEADGSDVEEVEEASDVDEEEEEDEDEEGGEDGSDADDEELEKFNAALAKTLNTSMLTGEGEDSDDDDEADMDDDQMMA----------LEPHLTKIFKQRQEAANKSKKKDNKDA---KATMINFKNR 782
3 -6.810PF07778.11; U3KAB2_FICAL/5-500; Mis6  ali follow..  8  1...................................................................QSSRTPKQHVRSKSQTDLSAWRKGGRIDSEKSLQNQSANDQKYDSQEGSL-KQALSYLEKVQGRVALKKNSVLQKHLNAVESTAQGLPPEGFEILLNVVLSGKFADTVNTCLLKCLIPASPENSVVKAVSWLCVRKCSANIQLLF............................... 148
4 -6.250PF06791.13; TMP_BPN15/54-258; Prophage tail length tape measure protein  ali follow..  7  107......................................................................................................................................................TAGLTADRMLALARNGQAAGLTFNQTSEALTELINAGTGSRFDEMSQAVAREKVAAAYGKLAT.............................. 180
5 -6.150PF11833.8; K9UNI5_CHAP6/14-205; Protein CHAPERONE-LIKE PROTEIN OF POR1-like  ali follow..  16  1.......................................................................................................................................................EDATFEEIQAAKQRVIAQLGGDRQLQDNIEAAY---DAILMERLKLRQQGKKVPEGIR.................................. 56
6 -6.100PF12807.7; I3JN14_ORENI/848-1030; Translation initiation factor eIF3 subunit 135  ali follow..  12  16......................................................................................................................................................QRGINVRYLGTVLEFMEKTPAKAQLEHIYRIGITEL--KHIFKTYLQGVELSALSAAVSHFLNCFLSSFPDAVAHLPPDE............. 98
7 -5.990PF11179.8; A0A0R3NSG9_DROPS/88-947; Protein of unknown function (DUF2967 topsan)  ali follow..  8  516.........................................RPRERDPNANDSSRTYISPGVSPSNSRRSSPKRDKKRTTPSASTGAIAKVSSAPPTMKDGHFFSASGKQQHQQQHQNQRQTPQQLSPSSSMSAQQRKYSSSSSSGSSERCEALDHERIQRARSSSTASASSDSDEAENRSVYERKLGADIFQQYSRLTQQEQLQQQ-----QQQREWERDRPPSRKNSKRIRPDSVIHTTIR 731
8 -5.890PF12226.8; Q197X3_HASV3/434-794; Turkey astrovirus capsid protein  ali follow..  11  222...........................................................................................EEPDTHGPGDEWCDALDAGDSRVLLEETDYEDEEDEDEDDEADRFDLHSSYGSEPEDDDEN-----NRVTLLSTLINQGMTVERATRITK---RAFPTSADKMKRSVYMDL--------LASGLSPGNAWSHACEEARTMGINQVPNLSGDR 357
9 -5.700PF00104.30; G0M9J4_CAEBE/165-378; Ligand-binding domain of nuclear hormone receptor  ali follow..  18  130.........................................................................................................................................................ASDVELTYLFAQLCFEYAGKRYQGEILKVTESFQENDLHHYYVEEMNRPRYGLRLAKLM............................... 191
10 -5.670PF10477.9; B4NHI2_DROWI/10-831; Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E  ali follow..  9  353.........................................SYHQMQDRHHKEPEPTSQLETIDLHGSNESRTSESKKDRACNALPVDTDKQIDHETMSKNSSSVSLNLLETKTGDDVKDVDMNTLEAVNFRLSQKESDQLIKLQHASNPEVEFNFDAFLNMDPLDNSLIGNDADMPGAEI-------------------SGFGKSRFSRWFGPNESTKNNNEESPKRREANTPDI....... 539
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.