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Query: PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCTTNAVNEKISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYIFGMSVTKDNASRGEIFEGSRNLKATMSRPSGDAPWNWEFSNNASGTVVTPRGPEGKPLRVIAYYPAIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYDFLVPAFMDRNVKDDDLVFTLIIDGKKEIFSLGREHLNNDGDTYGFKQGYANTYNVEFNNSSLNMRLLNWTSTRIDGDFGQNVTNPTNYQEMSFYYAEDNGGWTTALast
1 -50.300PF13149.6; R6DI77_9BACE/42-328; Fimbrillin-like  ali follow..  13  1........................................................................TRAV---DNKWNADHIGVMAVDANTTMGQKYKNVEYQTASTGTSADFTPATD---------GNGIFFEDASRQFTFAAYAPYETSHASSLPGNTENQHTVEKQEDIDYIYATGAMGSKSSTDNTAAGGSDCSFKHKMARLILKVQVSAADGFTDPSVLRFANYKLGGLIHEGTFDILTGTASATGSVVNDWMLIESTYPTPTTNNTGVMTLTMILLPQTLTDFLSLDITPD---DGENQTYSNKDL------IKPALEAGYSYTYTITVKKTGLTITIANW.................................... 287
2 -37.200PF15415.6; F0R915_BACSH/30-357; Fimbrillin-like  ali follow..  7  29..........................................GPNDWHDLPQPTQEELLPIGSTL----WLSYAKQNEDGTTYGTPNLQGYVVRTTTGGYNTLYPCTTQEVNG------------KLEINAEEIGAPLYLEAG-TYKFKMISPAYPVSTDLK--MTIDNGMYLYSTDGRYKETYSQPIPIEVNTSGVQYVKLNPIISQVARFTFTIHKGKGVYTLEPLEAGI---EISGLQNPFNHEAEGQLQYNWSSENDKRSWVTLPGSEIETDANGTLTGDIGVLPTLT-MSTPVAVLINMAVNGVPTQYMTLV-------NETHLLHAHSYNFRWTVKVEGGQISVVTWQNQSWTTD............................ 327
3 -15.100PF16249.5; D4IMW6_9BACT/92-282; Domain of unknown function (DUF4906 topsan)  ali follow..  9  1................................................................................................................................................TLYAVANLGTDTGPLPEAEVRALRSAWNPDGSDSGPMSAMRT-------TVRGTTQIAIELVRAVAKVDFSYTVADFSRSLSVRSVRLCNVPRFAALFGEGRITADGECAAFADDDGYSAVYYLPENLQGEVSIPGQEQK-----EANAPEYAAYILIEGEADGLHVVYRIYLG--ENNTSDFNIARNRVYRIEA.................................................. 185
4 -11.100PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  14  1..................MNKILKT---MALLAVPATVAVSCKDDGMDVKFTDKGPESVRFSIKLNDEFPLST............................................................................................................................................................................................................................................................................................................................ 66
5 -9.310PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan)  ali follow..  6  2............................FSFLTAAGLLFAGCHQPDELLPSVSRNGISVTAQFVKNNSEGAAEFYGEFKGYPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDDNVTVD--------------PAVLYMNLNEDNYITVTDQLKQKKVYKVRGRIVKSKACLLEELSLPSQGLNAIIDQETKEVSLIAAGNIEPCTGTYRLSYHATISPDPATTVIDWN--------TVTAYDGV......................................................................................................................................... 209
6 -9.270PF16339.5; Q8Y460_LISMO/1-79; Domain of unknown function (DUF4969 topsan)  ali follow..  14  1..................MKKRGLL--LVSVLMLFIFLTVACGSSEDNEESGEISTKEIELTATIEGTVDPKSKLTIDGKAVKKDD............................................................................................................................................................................................................................................................................................................... 79
7 -8.670PF09716.10; B3L0Z3_PLAKH/1-80; Malarial early transcribed membrane protein (ETRAMP)  ali follow..  15  23MCSENVVKKKVL-TVSEKLNGSDKTKKNVALAGAATTAIALIST......................................................................................................................................................................................................................................................................................................................................................... 69
8 -8.600PF16390.5; R6MWU6_9BACE/1-77; Domain of unknown function  ali follow..  13  1...................MKKFFHYILMAALIGGVIPFISCSDDDETINEWNLSYISLLPVDYLKPLTTEFNLTHSEGIGIEGKVDF............................................................................................................................................................................................................................................................................................................. 69
9 -8.570PF08842.10; C3QB88_9BACE/25-377; Fimbrillin-A associated anchor proteins Mfa1 and Mfa2  ali follow..  4  4.CFSGL---RLDFYFTHHTGNGNLFGEKVRRIHVYLFLQLHATDNGDKLEYSYLQNGQIQTVSKPNPWGKLSDEYVMNLDKVPPGKYRIISWADNGQKDNTTYFHGEMK-------------------------------NPASHNLRKDVTLGATMADDLYMFLKCRTASGLPEEEINDLWYGAAGSRHPQSDMYTYETVEIELIRNTNLLKVTLSHLTPEVRDTHAANRDTDFKLWAVATDERYKSDNTFDGYTRSVR-----------SPFKTLMDANTLSADIKVLRLTMDRPVLLYIETPGGRRIPEQPIDIVSMLFKARNPDFDRIYEHPVEVRIGALNIRIFIGEWEIVNVK.............................. 353
10 -8.240PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  16  1..................MKKKLLF---ILSLTFIGISCFACLDDETKYVTQKKTNYPLAFAVAVNNVQTGTTSY.......................................................................................................................................................................................................................................................................................................................... 55
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.