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Query: PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDSLFWAIDIKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIGGNNSFPHEIGLFIGYPAKDVAAFMGLVRLPFTCQRLWKIYGNPARSLALAEQYRCCRNKMGAILARGTSKTLEIDRSDHPFFCQTDENDYQYLPLast
1 -68.400PF12672.7; R5DFE6_9FIRM/23-194; Protein of unknown function (DUF3793 topsan)  ali follow..  23  1.........................................................LILQCAPLFKGYKVACITNVRREDMRNMHLLL------------NGTGICYRALTFCRDKYLVLLYRPAQLKTYLKQPEVKTFLADYGYE-ENSLEKVLERLSLRVRNEIEFPHEIGIFLNYPLEDVRGFIEHKGQDSLFCGYWKVYHDPEKAKLTFWTYDKAKDCAVNEFLAGKTIREIV.................... 172
2 -8.640PF04467.12; D7DUL7_METV3/44-185; Protein of unknown function (DUF483 topsan)  ali follow..  10  1.......................................................................................................................................KQIYIVDKYKPVVRPAIDPFVSSELGIYRRLDD--LELGKLLNYPKCCVNSFSKECRF-----------GIDSEHLKDIDNLIALLNEEDEEIIKSEDYKFFKKYIPNINGVYAIVLPSGFIP 110
3 -7.340PF16477.5; R5RU88_9FIRM/265-554; Domain of unknown function (DUF5054 topsan)  ali follow..  10  43LIAEHTWGMDVKKYLFKNWNKKDFHQARTLDTTSAESYGCWNQSILAGMKEELLHYH--------------------GDPITSSYTAFEASHQEQRDYLTKGMSELP----SLLKEAQTAMVFSYPVIPKTAVHQQPLAPIVLKDVTVTVGKNGEITSIQKH-SSGNTYVLCLGKVE-FGGKEVDDCYFSYGRDLSENFFWSEFGKPGLRLEKDIRHGIFSPCPLSIHALENTLYITLGFAPEA.............. 268
4 -6.610PF18690.1; Q9RTM8_DEIRA/138-219; Family of unknown function (DUF5639 topsan)  ali follow..  19  16................................................................................................................................ARFVWEAQGQVHLLHFGHERE--VERALSVLPGAVEITGGFPDGVGVGEGGPLRDLR......................................................................... 76
5 -6.240PF16268.5; F8E0G1_CORRG/18-447; Domain of unknown function (DUF4921 topsan)  ali follow..  7  178IIARDHFTPDATTTDQ-----LASSGSLDWQTHRHFMAFTVDGMDQLYRANRYVRYVAAFQNWLAPAGAS-KQLVAIDELQNETEIAQVRSNPNMYNEWAVDYAARHNLIIAENEHAIAFAGFGHRWPTLEVFSKSGTTEPWLMSDAERDAVSDLVHACHVAAG--PHIACNE-EWLHRPLDVDVPM------------PWRIMAGFEGGTKIYIN-GQLKDRVLTALQKAQDEGRLAPGISLGEECTMRPNSLKY.. 430
6 -6.130PF04577.14; A8ZY86_DESOH/245-466; Protein of unknown function (DUF563 topsan)  ali follow..  9  2............NYAHWMTEVLPRIALF------CNEPRFNRIPIVVNDGLHENIMESLF-----FVAGPEREIITLPIGRALAIDTLYGRFSPRAFELLRERMAVLDPKTGNRDWPEKIVLHRNSGYRKVVNIDEIESELVGRGYAVVQPEKLTFLQQVHLFSHVKHIVGSSGSAL................................................................................. 177
7 -5.890PF16108.5; A1S7B5_SHEAM/18-146; Domain of unknown function (DUF4826 topsan)  ali follow..  8  8.......................................................................................................................................................VRTQFQKANRFLAEKGILPGKVLIDESRYLVPYVAVWKMEAQKPAKQTYWVMSGDAQTARDALKHFSMMWQLKAENLIQSGA----VQDPTQAKFANMLISRAQSL. 119
8 -5.700PF03767.14; O23808_PHAVU/28-255; HAD superfamily, subfamily IIIB (Acid phosphatase)  ali follow..  10  19...SWRLAVEAQN----GFETIPQQCVDATANYIEGGQYRSDSKTVNQQIYFFARDRHVHENDVILFNIDGTALSNIPYYSQHGYGSEKFDSERYDEEFVNKGEALKNYNKLVSLGYKIIFLSGRLKDKRAVTEAN----LKKAGYNTWEKLENVVEYKTAERAKLVQEGYRIVGNIGDQWNDLKG........................................................................ 210
9 -5.620PF06041.11; J7SK64_MORMO/15-184; Bacterial protein of unknown function (DUF924 topsan)  ali follow..  12  4.....FWFNEATPE---QWFKKDT-------------QFDDLIRRRFLKVWEQAAAGECSSWRAHIGG-RLAEILVLDQFSRNLWRGDARSFAQDPMALVLAQEAVKTPDYLQLPPVQRKFVLMPYMHSESALIHQQAEQLFKGLDESTEDFERRHKAIIDRF---GRYPHRNEILGRNSTPEEAEFLLQPG.................................................................. 170
10 -5.500PF15730.5; H2QS15_PANTR/27-176; Domain of unknown function (DUF4680 topsan)  ali follow..  12  85..............................................................................................................................................................IQKDAAKKYDFP--------IPLNEASKIMKKKKKVLVWNRVYKVISRMLEENEKYRHRLKCQR.................................... 140
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.