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Query: PB006101 JCVI_PEP_1096697844517 /source_dna_id=JCVI_ORF_1096697844516 /offset=0 /translation_table=11 /length=371 /full_length=371, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YLISFSFLLYSCDEKPKSGITNPSFLPNASGENNEMLIVMDSTKFKGKIGRELVDIYSSYISGLPQPEPRYDLRYIKPRKFNSILKHAKNIVVAFSLEGNSLDSEILRRNFNSESLDKIQSDSSLFYFVRRNQYARGQVVLYLFSENDDDLYSKIKRNRNSILKFFDDELKKRVDTEIFRKVENNLMDKIFTDHNIKIKIPYGYDLAKSINEENSNFFWLRQLDLEYDKNIFLYYEDYSNSELKNFYDVFNSSDINIKPIRAYISKKYLRDSEKSKIFMDIQDVFPIQSNKINFKGNLAIESRGLWKLSDISAGGPFLSKIIYDSKLKRVYYLEGYVYAPGLKKRGLMQEISSILMTFELast
1 -96.600PF16125.5; R5BIZ5_9BACE/29-321; Domain of unknown function (DUF4837 topsan)  ali follow..  24  1.............................SGKAGEVIIVMDRENWEGSLGADTRELLASDCPFLAQREPLYNLVNVSPNGFADLFKIHRNIVLFNINPQLD----------------------TTGVFYKHNVWANTQVVVQVSAYDSEGAQKILKDNGKTIISAIEQAERDRVIINTLKYEERTIAPEVEARFGGAMHFPSGYKLKL----AKDDFMWIADDKQYVYQDVFIYRYPAEKNHPFT--------SDNIIRHRNEMLKKYVPGMFENTY-MTTSEFFTPQIEYMRYRGIHFVQTRGMWEVKNDFMGGPFVSHSFYTPDGKDIMVLEAFVYAPRYDKRQYLRQVESLLYS.. 293
2 -8.540PF01789.16; Q11A16_TRIEI/25-179; PsbP  ali follow..  9...............................................................................................................................................................................................TTDGYEFLYPNGWIEVKVSDGPDVVF----HDLVEATENVSVVISPMVEEKTLSDLGTPTDVGYRLSKNAIAPKDS-------------GREAELVNAEAREYKTKTYYKLEYAVKLAD---GRERHNLASVAVSRGKLFTI--NISTTEKRWEKVNDKFQQVINSFS 154
3 -7.690PF10738.9; O53780_MYCTU/57-227; Probable lipoprotein LpqN  ali follow..  11  17.......................................................................................................................................................................................TPVHHGDPGSPTIDLPVPDDWRLLPESSRAPYGGIVYTQPADPNDPTIVA----------------------ILSKLTGDIDPAKVLQFAPGELKNLPGFQGSGDGSAATLGGFSAWQLGGSYSKNGKLR---VAQKTVVIPSQGAVFVLQLNADALDDETMTLMDAANVIDEQTT 169
4 -6.900PF13970.6; A3HUB0_9BACT/7-342; Domain of unknown function (DUF4221 topsan)  ali follow..  10  1..IFSLLLFFSCGRSKDSKSS------NASNLFENLTYSIDT-------------VVDSKGEIINLSNGLRYFDISVDESSLLLFDRKQTIFQEIDLNDLKLKATY-----------PYEFEGPNGIGKAMNFQILPDRTLFIPTFSKSGIYNLQGKLVSRLNFKPTEAEGLEETDPFTLINAILINPKSGLLYSLPGDYISGVKDLAIIDPDNNKVKLIKLPEMDIAGDFKVFWNTENGKAIEMEEYSLALFDETLIITCTVGSGIYTYNTSNDSLNFVDLPHKIIPTKKSGEILNEVTEESVFWDEYRKVASQVSYYELKWDKEKERFYRFASRTFLGEKESDPVRDEVYLLAEGFN 330
5 -6.370PF16339.5; Q8Y460_LISMO/1-79; Domain of unknown function (DUF4969 topsan)  ali follow..  16  11VLMLFIFLTVACGSSEDNEESGEISTKEIELTVDDPIIPTDEN--------------EATIEGTVDPKSKLTIDGKAVKK....................................................................................................................................................................................................................................................................................... 77
6 -6.370PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan)  ali follow..  4FLTAAGLLFAGCHQPDELLPSVSRNGINSV----TAQFVKNNSEGAAEFYGEFKGYPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDDNVTVDPAVL-YMNLNEDNYITVTDQLKQKKVYKVRGRIVKSKACLLEELSLPSQGLNAIIDQETKEVSLIAAGNIEPCTGTYRLSYHATISPDPATT---DWNASPKLTVTAYDGVSKTVYT............................................................................................................................................. 215
7 -6.140PF12912.7; B8J172_DESDA/9-129; NLPC_P60 stabilising domain, N term  ali follow..  10  1LPALTLLLLAACGGKNVPPRDGHT----------------------------------------DWMGTIADLRQFPQNLEVYAQNAGPDRRLISQTEQDRQVARFDRIFFGPWDMRKTSMRKRDVAAIFGKARGYRQGSERWTQTEWDAIARNADLKN........................................................................................................................................................................................................ 120
8 -6.120PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  10LLAVPATVAVSCKDDGMDVTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAKLLFDGTSVSDLTIRTKTYGTYDAAIFVPLLKDIPDGTAEITFTAQNTGLGITE.............................................................................................................................................................................................................................................................. 123
9 -5.990PF16304.5; Q4KB86_PSEF5/24-175; Domain of unknown function (DUF4946 topsan)  ali follow..  1..................................................................................................................................................................................................EPQVTWPQGWTVEPLPAPEGEEAAKVSDTAGNPLMVMELTMTQVDSGHVVNLQGVLLEMRKSV----------------QKDFAQGGYQSVCNKIHAAQLSRLEALETTCTITQNGRHV---LSQTLVAALNGDKAYVLS--YAGQAAAFAESQDEILAVRNGLK 151
10 -5.880PF07686.17; A2BGB5_DANRE/30-142; Immunoglobulin V-set domain  ali follow..  2..........................................................................................................................................................................................SSELEAVNGTEIRLKCTFKSNRPLSEERTSVSWSFMPLGKTKEEPFFHYQGHAYLPPGGLFKDHVVWSGDVMKGDGSITLQDVQFSFNGTY.................................................................................. 92

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.