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Query: PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNILNNKNKRTSIFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVITVVPIGNFKPLTLast
1 -62.900PF12988.7; Q8A4K6_BACTN/14-147; Domain of unknown function, B. Theta Gene description (DUF3872 topsan)  ali follow..  51  1..............QIMILCCMAAALFCFTFCSDDLDIQQEYPFTVEAMPVADKIAGGQTVEIRLEITEEGNFSGTLYTLRYFQPDGNGLLKLEDGTVLKPNDRYLLSEKKFRLYYTSRSTNEQTIDLYFENNWQDVRQLSFSFNNR.................... 134
2 -26.200PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  12  1MN-----------KILKTMALLAVPATVAVSCKDDGMDVKFTD-EMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAKLLF------------DGTSVSDLTIRTKTYGTYDAAIFDIPDGTAEITFTAQNTGLGITE............................ 123
3 -18.900PF15418.6; Q5LII3_BACFN/21-149; Domain of unknown function (DUF4625 topsan)  ali follow..  13  1..............................SCSKEDEGDTIKPVIDLLEPEEGAILSSHGVHFEMNLHDNEAIASYKINIHNNFDGHSHTRASEAGITKPFTFERTYTDKAGQKD-ADATPGNYHLMVYCLDQSGNETYVVRNIVL..................... 129
4 -13.100PF16407.5; F9ZCN6_ODOSD/19-184; PKD-like family  ali follow..  14  1...............................CYDDNDYRFVNTIEVEPFQDSPWAALGDTVRYKPVLHFASGNDELDLAYEWTFAGKT-------------------IGDELNLEWIVDTVATGQVILRVTDRAGLVYSNQKSLRIDSPYSKGWMILSEKNGQSSLG 121
5 -12.600PF16383.5; R5CWT1_9BACT/1-176; Domain of unknown function  ali follow..  14  1MK----KNHFSLRRKAYALMSLAAGVLLFASCAQDGFDEESFDSGVYNTSTDDIQITASADGTQQTISWPVVYGAGGYHAILTNTTAGEVLIDSVYD-------------GTSFAVARVEDNNYELSLEVLGNEERNNTGCDPVIKTFNTFAVAFATIPSGSDLC.. 153
6 -12.600PF17962.1; Q98K29_RHILO/835-947; Bacterial macroglobulin domain 6  ali follow..  10  8................................DDEVPQGGTAKFSLIAVAPDGKRETLKGAQWTLV--------KVERNYQWYRSNNSWSYEPVTFTKSIANGQIDLGADGDATVSVPVDWGQYRLEVETSDPEGPATSYEF......................... 109
7 -12.100PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  10  1MK-----------KKLLFILSLTFIGISCFACLDD-------------ETKYVTQKKTNYPLTAFAVAVNNVQTGTTSYYHGKIDQTTHKIEIGTIETLMDGASISPDPATFIQNWQ------KEQKVTVTTANNQSTTYTIVLPKYDETLKDIIFIDD........ 139
8 -11.900PF08329.10; Q5E4F3_VIBF1/23-163; Chitinase A, N-terminal domain  ali follow..  9  36.........................................................................DFAEVPVTWDRWSGESA-VLLNGVVVHEESVSPAASQKASTTLQVRQGGQYEMTVQLCNGSGTSAAKSIVVADTDGSHLDPLPMNVDPANGNYT 138
9 -10.600PF07705.11; Q8TPY5_METAC/349-453; CARDB  ali follow..  8  16...................................................LAKAWNKLNNTVSVTVINNGPENADSFALELYS----------DGTPVESRQVTGLANGTVDFSWKPEDIKDYTLKAVVVPGSIISDTDTTNNELSK................... 105
10 -9.510PF06832.12; A6X4J8_OCHA4/603-692; Penicillin-Binding Protein C-terminus Family  ali follow..  12  3............................................VLKATIEPAPRIVFPPDGAHVELKALTDNAS---PLVLKLQGGRAPFR------LANGKPIAEIERRRTTNWQPDGTGYSTL--TVVDAAGRAASVNI......................... 90
11 -9.230PF14466.6; R6Y7E1_9BACT/10-135; PLAT/LH2 and C2-like Ca2+-binding lipoprotein  ali follow..  13  2...................IVALFLGLILVSCSDD----------------DDQGGVIDTGIHKIVVEQSGDIDAFELGLVFGAVNTTS----------GPTKLYDEDGKYLGESHSVTRMEDAKVSCQTGDD.................................. 89
12 -9.140PF00630.19; DYHA_CHLRE/427-531; Filamin/ABP280 repeat  ali follow..  11  13..............................GLLAETISGVEVPFIIQAKDTLNDKRTSGGDVFKVTVVSADGKNEGVSRVR------------------------DLQNGQYEVQYAAPTAGPYLIHVAFNELG................................. 92
13 -9.050PF09136.10; P70745_ARTGO/718-806; Glucodextranase, domain B  ali follow..  6  2...............................................................ALTINSPAQADSANTTVSGTTAAAKVYVSVNGNIFEAPLTPAGDGTSTFSVDLA--PATKNTVTVAAVGSDGGTAVESRTVLHYGS.................. 89
14 -9.030PF00927.22; EPB42_HUMAN/588-686; Transglutaminase family, C-terminal ig like domain  ali follow..  11  6.................................................KMPEKAEQYQPLTASVSLQNSLDAPMEDCVISILGRGLIHRERSYRFRSVWPENTMCAK-----FQFTPTHVGLQRLTVEVDCNMFQNLTNYKSVTVVA................... 99
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.