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Query: PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst MKTLTFKYLKLFLLAVAMINLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFYLDRHGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMVYGPGDVSYLDDVWIRGNVLSGYLDGHDNYVDFTGVLast
1 -12.400PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  10  1MNK---ILKTMALLAVPATVAVSCKDDGMDVKFTDKMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAKLLFDGTSVSDLTIRTKTYGTYDAAIFVP----------LLKDIPDGTAEI........................... 110
2 -10.300PF16390.5; R6MWU6_9BACE/1-77; Domain of unknown function  ali follow..  16  1MK-KFFHYILMAALIGGVIPFISCSDDDETINEWNLSYISLLPVDYKPLTTEFNLTHSEGIGIEGKVDFQF............................................................................ 71
3 -8.800PF16339.5; Q8Y460_LISMO/1-79; Domain of unknown function (DUF4969 topsan)  ali follow..  11  1..MKKRGLLLVSVLMLFIFLTVACGSSEDNEESGEISTKEIELTVDD.................................................................................................... 45
4 -8.730PF12988.7; Q8A4K6_BACTN/14-147; Domain of unknown function, B. Theta Gene description (DUF3872 topsan)  ali follow..  9  1......QIMILCCMAAALFCFTFCSDDLDIQQEYPFTVEAMPVADKIAGGQTVEIRLEEGNFSGTLYTLRYFPDGNGL----LKLEDGTVLKPNDRYL------SEKKFRLYYTSRSTNEAQTIDLYFENNWQDVRQLSFSFNNR.. 134
5 -8.590PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  25  1MKK---KLLFILSLTFIGISCFACLDDETK..................................................................................................................... 27
6 -8.150PF16383.5; R5CWT1_9BACT/1-176; Domain of unknown function  ali follow..  12  1MKKLRRKAYALMSLAAGVLLFASCAQDGFDEESFDSGVYNTQLEAPSTDDIQ---------------------------------ITASADGTQQTISWP-YGAGGYHAILTNTTAGEVLIDSVYDGTSFAVARVEDNNYELSLEVL 119
7 -7.440PF12092.8; B8FMB6_DESAA/3-128; Protein of unknown function (DUF3568 topsan)  ali follow..  14  1......KALLALLCAIVLISTSSCAAVVLGAGAGAGAFTYVKGELVRSYPATYAKAVSVT--NAVINELKISIDSKVDDGITTTFNGRRAGDKPVTIKVTMLDPKITQIGIRVGQISETIHSHI....................... 123
8 -7.200PF05479.11; B9SKW9_RICCO/41-169; Photosystem I reaction centre subunit N (PSAN or PSI-N)  ali follow..  11  22.RAAMLCLAATLFTTAAAVSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGT-----CKFPENFTGSDDLALECEGKDKYKCGSNVFWKW.............................................. 129
9 -6.990PF02019.18; W5KAT6_ASTMX/58-185; WIF domain  ali follow..  12  1...................................................VFMSEEEVKKLLGLDAELYYVRDDVVNNYALSFILPVPSETNSLHFTWHSKSKVDYKLGFHVENPAAMDQPQSNIS---TQGEVPRTRSVFR.... 89
10 -6.930PF12930.7; R6S6Z9_9BACE/1-127; Family of unknown function (DUF3836 topsan)  ali follow..  7  1MKAKVFLKMFVVSAVLLVASLAT-----SARSNDGQLIYNPIEENGMTIGQTVYKMDGSTLANYMKYNYKYDDSKRMVESEALRWDSDKDEQKDLRINYIYEGKTVTTNYYKWNTKKQAYVLV........................ 119
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.