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Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPLast
1 -24.900PF13102.6; D4INW2_9BACT/105-205; Phage integrase SAM-like domain  ali follow..  18  1................................................................................................................................TVAEMYGRLFAEMKKMERLGNLAVYKYSFNSLMSYTRLDIPFREIDCVWLKRYEEWLHAR. 62
2 -23.300PF17293.2; F2IGJ6_FLUTR/10-97; Arm DNA-binding domain  ali follow..  12  1.........YFIKRNKMLRNGEAPIYL-------RITVNGKSVELSIKRSIRPELWDTTKNKCKGASEPAKATNDYLDSIRGQLYTHQQTMQERGKVIDAKTL...................................................................................... 87
3 -9.960PF11646.8; Q15XY5_PSEA6/292-390; Protein of unknown function DUF3258 topsan  ali follow..  4  1.............................................................................................................................HSPLLSEVYKEFLQHKINKETLKMQKDYERYWIVWTAIGP-DKAINDYLPKDIGIFIDRCFELP 65
4 -9.200PF14659.6; R7K072_9CLOT/60-117; Phage integrase, N-terminal SAM-like domain  ali follow..  10  2.................................................................................................................................FSSLVANYLEDMEHRLKPTTMENKRFIIDTKLLPYFGKQKICDIDTIKVRKWQNELI... 58
5 -6.750PF18644.1; C5ZX70_9HELI/6-137; Phage integrase SAM-like domain  ali follow..  9  3...................................................................................KDDFAENLLFWIERFVYSKLNSLSNHQVQNKKDIIMPLNFLRKGVKSIQEIQEICKQCRNA-GLIGINTYIIPLLKLYEYLNYL-SLKEVDEEMLKEFLTINTSS. 108
6 -6.710PF02899.17; Y4QK_SINFN/20-100; Phage integrase, N-terminal SAM-like domain  ali follow..  9  1....................................................................................................................................LRQRMSEDMQVRNSLNTQLSYLRQVSLFARHFGKA---DLLGREDIRTYQVYLANE. 55
7 -6.630PF03074.16; F4RJP8_MELLP/239-600; Glutamate-cysteine ligase  ali follow..  6  184..................MDSEIGWRVEFRTMEVQITDFENAAYSTFITLLVRAPLSKVDENMKRAQRRDACKTERFYFRKEVFPNSNNTKTSVQEEYEEMTINEIINGKGNYLGIVRKYIATQPGIKDKLERYLELIEGRARGRLMTTASYLRKVVKEDPNYQHDSVVGDQVTHGIVMRAKG...... 361
8 -6.310PF02671.21; S9X6K9_SCHCR/274-318; Paired amphipathic helix repeat  ali follow..  17  1......................................................................................................................................................ETYMEFLGVLRTYQKAQKSIHEVSPDLLDEFKLFL.... 45
9 -6.090PF13926.6; B6H420_PENRW/282-415; Domain of unknown function (DUF4211 topsan)  ali follow..  9  23......................................................................................................................TRHAYKQPKEYFRDVIGWMVQNKLNPAFPRSDDMYKMAFMKLEDEVKGRAGSQLISSVWNPSFVYALQARP 93
10 -5.850PF14551.6; E3M3H8_CAERE/111-220; MCM N-terminal domain  ali follow..  9  1..............................................................................................................................QRAFRDFLTVFKISHLDEDENMMTGNYMERLLECNNAEVTHI---NLNLAHLQSFSRKVIAYP 77
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.