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Query: PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGTIVYLSIRLACACYILYKVCGQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDLDNAGNVLFKLNDADKDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDSLMGKYLDGNGNPLSVRKTKSVVPVSDGWKQYLast
1 -76.100PF13498.6; A6KY66_BACV8/2-218; Domain of unknown function (DUF4122 topsan)  ali follow..  57  1.EEIVYLSIRFGCTAYLLYKVWKQKERIGKICD---LLYTPRNRPQAEKDNGEPGNAQDVMGATRFVYLDENAGKTVAPYMSQQLETGSDFIGADKDIPEDEVECKLPLEEMRMLKEEQEELDSRSPETEAIAPMVTPADLLNVGDVLLNLNGAGSDENKSYRAAMTLHSIRETDMFELFSSQVENKKLIEELMGKYVDKEGNALPLKRERKESKHVTDWR.. 217
2 -7.410PF04931.13; K2SXE2_MACPH/89-879; DNA polymerase phi  ali follow..  13  585LLTEVLLSFALSEQVFTVFASELTAEGLHSMIDILSKKESMSGQQDLFDQQGSEDGEDA-----------SEDDEDEQDSDVEMVEADGSDVEEVEEASDVDEEEEEDEDEEGGEDGSDADDEELEKFNAALAKTLNTSMLTGEGEDSDDDDEADMDDDQMMALEPHL-----TKIFKQRQEAANKSKRVLDLLLIFV......................... 791
3 -7.170PF11179.8; A0A0R3NSG9_DROPS/88-947; Protein of unknown function (DUF2967 topsan)  ali follow..  6  541....................................SRRSSPKRDKKRTTPSASTGAIAKVSSAPPTMKDGHFFSASGKQQHQQQHQNQRQTPQQLSPSSSMSAQQRKYSSSSSSGSSERCLRELAAAPGTMREALDHERIQRECFARSSSTASASSDSDEAENRSVYERKLGADIFQSRLTQQEQLQQQQQQREWERDRPPSRKNSKRIRPDSVIHTTIRE. 732
4 -6.890PF11833.8; K9UNI5_CHAP6/14-205; Protein CHAPERONE-LIKE PROTEIN OF POR1-like  ali follow..  14  1.....................................................................................................................................EDATFEEIQAAKQRVIAQLGGDRQLQDNIEAA------YDAILMERLKLRQQGKIKVPEGIR............................ 56
5 -6.160PF00921.17; W6TW37_9SPIR/56-340; Borrelia lipoprotein  ali follow..  10  119...........................IKGIVDVVLKEGNPEAGTEKKALDGQTDRTGGNAADDEAGKLFNGTNAGAAGTNAKKSAADAAKAVGAVTGADILQAMIKVGGGAYKLANAKDDDKPSTKKDAIIAGAIALRAMAKGGKFAGQANAEDAIVVVKDAAISAVTKALDI-LTVAIRRSIDIGKSVKESM............................. 285
6 -5.970PF02669.15; F7QKE9_9BRAD/5-197; K+-transporting ATPase, c chain  ali follow..  8  1IRPAIVFLVGLVAITGLVYPLAM---------TGAAQLLFPYRAQGSLIEKDGKVIGSSLIGQQ-FRGRPSATTAPDPQDSSKTVSAPYNAANSGGSNLGPTSKALAERLKEGVETLQKENPAAAVPVDLVTTSGSGLDDISPEAALFQVPRVAKARNLPEARVRSVVEGMIAQRTLGFLGEPRINVLQLNLAMDR........................... 193
7 -5.640PF06791.13; TMP_BPN15/54-258; Prophage tail length tape measure protein  ali follow..  7  107....................................................................................................................................TAGLTADRMLALARNGQAAGLTFNQTSEALTELINAGVRTGSRFDEMSQAVARFTDASGVPVEKVAAAYGKLATDPTSGLIAMAQ...... 191
8 -5.630PF16972.5; W5JCQ7_ANODA/1-506; Na+ channel auxiliary subunit TipE  ali follow..  9  298..LNLVFAMAIPIPSFIISVIYLAFAYFVIFNEDEEAALLDKNGEEEATEDELADTDEGNDNKINNENEGEVVVTANHINEKQQQQQNHNHTTGSTDDGDVNTTATTPIQPLQPNGTVNNSMNNTNTTATTNTNGSS-TDLNSFGHQLKVKMADEMSR-ESIDGGGGVGGVGGGGL---LSNSVSLQGNLSKTMTTSISTPPGPIAA................ 505
9 -5.490PF15498.6; H0UZS0_CAVPO/55-708; Nephrin and CD2AP-binding protein, Dendrin  ali follow..  7  501........................................AGEVHVPCAAAQPASPEHAASGAAAPADAGSVRGSKVTAAPRRAARTPGPYAGALREAVSRIRRHTAPDSDSDEGEEELSVHSGSSDGSDTEAPGASWWSERTPPETGGTSPGEGGKTADIRETLDAISQPEQALFPTRDTNGTPQGHR.................................. 653
10 -5.420PF10805.8; Q8EDR8_SHEON/3-97; Protein of unknown function (DUF2730 topsan)  ali follow..  7  26................................................................................................................................SKTYAKREDLAKVEKKVDELKAQVDSLPTQKQMSDLMIELANTRGE--IKELRANIQPVEHLARLLLEQR......................... 93
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;