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Query: PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSRIISLGLVASLVCLLPQVAEAQIAASNPLEWTALAEGNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVTAGMLDRDNGEAARMALSHWHRAAALVLast
1 -9.270PF13605.6; Q8A4J9_BACTN/9-61; Domain of unknown function (DUF4141 topsan)  ali follow..  15  1......KASLVCTVFLLATVQSSAQWVVTDPGNLAQGIINMSDNIAHTSKTATNTAQ............................................................................................................................................................................. 51
2 -7.700PF10112.9; U5LFW6_9BACI/8-198; 5-bromo-4-chloroindolyl phosphate hydrolysis protein  ali follow..  6  60.................................................................RREYKYIKTNLAEGKKKISRLHKSLFAIRH-LPSLKQRIELMRITRKIYRLTKKEPKRFYQAERFYFSHLDSLVEMTEKYVFLST--------QPKKNLEIDQSLLETRRTINELSQTVEKDLYEVISDDIDNLNFEID.......................... 189
3 -7.200PF04344.13; E0SIM0_DICD3/15-214; Chemotaxis phosphatase, CheZ  ali follow..  7  38........................................RDRLDYVVQMTAQAAERALSCVEAAQPRQNQLEEESKSLKVRWDQWFENPIELSEARELVTDTRNYLESVPDHTAFTNAQLLEIMMAQDFQDLTGQVIKRMMDVVQEIEKQLLM............................................................................ 151
4 -6.670PF06892.11; U3U1D3_9ENTR/4-160; Phage regulatory protein CII (CP76)  ali follow..  8  22................................................................MAELAQRAGMKAQTLRNKLNPDQVNQLTVPELLLLTDLTED-----ATLIDGALAQLHCLPCVPVNELAKEKFQSYVLKATTEIGSMAASAANPERITATCRRSILEVANNGIRCMMLAALAVQTRVH...................................... 144
5 -6.530PF14257.6; F5YF55_TREAZ/67-270; Domain of unknown function (DUF4349 topsan)  ali follow..  9  6.............................................................QAELRIRVENPEAAEKPLADLMAKYEAWSSSTRIYENSRDYTVRVSKYYDAFLKEAAN----LGRVLRRTESAEDVTLRYYDLEGRLSTKQELLKTYGYLSKAKDIDEIMTVEKRIAELQQEIDWTGTQLRNLSNLVDYATVD.......................... 146
6 -6.350PF11932.8; B3PJG1_CELJU/9-247; Protein of unknown function (DUF3450 topsan)  ali follow..  8  2............ALVAAGLFALPALAVEETLQKQESIDKSAALSQARIDALADQTADDLQAFRTASQRLESLTIFNQQMAKLIASQQTEINSIRQTAEIDNIETGALPLMLKMTDTLAD----------VKVDVPFLKEERQERIDNLKALIDRAD----VTAGEKYRRIMEAYLVEVEYGRTIEAYRGEL....................................... 168
7 -6.260PF06730.11; Q9VK91_DROME/1-222; FAM92 protein  ali follow..  7  18.........................................KIINERINITERHLMEMCSSFALVTRKMAKYRDSFDELAKSVKSYADDEEINESLCQGLKSFTNAVTIMGDYMDINVHRLEHKIVNE---AQFEQLCKSTRDNLRLAVIARDKEVLRQRQMLELKSK-LFKAKMEVQRTNKEIDDIIGNFEQRKLRDLKQIIS--DFILIAMKQHTKALEILSASYYDI 212
8 -6.250PF12296.8; Q4W9B0_ASPFU/27-155; Hydrophobic surface binding protein A  ali follow..  11  2..............................................................TAVVEAVNSIASQMVVLNNTVTSYDGGIQGTLTALKIEVESVKLSCDLRDAISTTQASAN--FTNAESLTVATAFINLQPQIFSTLNNIVAKKPKFDTG------SLAFLVKGDLQQQKDLSGQLGDAV....................................... 127
9 -6.160PF10168.9; I3KZS6_ORENI/8-718; Nuclear pore component  ali follow..  9  521....................................................GDKDTSPPPPECLELLSRATQVFREEYILKQDMAREEMQR-----RVKLLTGQKNKQLEELSLCREERKSLREAAERLADKYEDAKYRQETIMNRVKKVLCSQSQLPILSNSEKKKELQTINDQLKHLDNCIRQVNMKMEYQKTQ---VSLNAPQKKVVQDVLIGDMMKQIKDIKNHF 710
10 -5.950PF06511.11; SIPD_SALTY/5-341; Type III secretion systems tip complex components  ali follow..  12  150.................................................................ENVVAVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATELQKMVQDIDGLGAPKDSKLEMDNAKYQAWQSGFKAQEENMKTTLQTLTQ--KYSNANSLYDNLV---------KVLSSTISSSLETAKSF 336
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;