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Query: PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;, from HGM_OVER

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKIERLFIYCLLAGTSLLASCNSEDMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVKIEVYGLTYYYNPDIELVKGTVYTYTVNKVDIPYEIIDNNGNSVSGFENISKDISISGTHIPGLTITGTCTVTMNSAAISANGKPGISVENDNVTLTLIVKGQDNSILSNDSAGILVRKNASVIIKGNTTTASDSKLTVKASNDTPGIGVAEMNTECNKIDIEDITLDVTGGGYAAAIGTNVKWYTNTKCNSITIKNSVITACSGKGAAAIGTGVGYGGNGQTGPTIGSIVIENSTIYANLLPLNEYGANGAYGACIGLGVRLWIGKSACGEIRITTDNETSFMNNLQRSANNTNINGRDGYKIGYGDILWDPDRPNTTWCARSFSGVWINNTRKDTGDDRGKGYSGLast
1 -32.300PF13149.6; R6DI77_9BACE/42-328; Fimbrillin-like  ali follow..  16  1.......................................................TRAV----------DNKWNADHIGVMAVDANTNVEYQTASTGTSADFTGNGIFFEDASRQFTFAAYAPYETSHATENQHTVEKQEDIDYIYATGAMGTAAGGSDCSFKHKMARLILKVQVSAAVLRFANYKLGGLGTFDILTGTASATGSVVNYNVNTGVMTLTMILLPQTLTDFLSLDITPDDGSNKDLIKPALEAGYSYTYTITVKKTGLTISGST................................................................................................................................................................................................................................................................................................................... 283
2 -22.000PF15415.6; F0R915_BACSH/30-357; Fimbrillin-like  ali follow..  9  29........................GPNDWHDLPQPTQEELLPIGSTLWLSYAKQNE------------DGTTYGTPNLQGYVVRTTTGGYNTLNGKLEINAEEIGAPLYLEAG-TYKFKMISPADNGMYLYSTDGRYKETYSQPIPIEVNTSGVQYVKLNPIISQVARFTFTIHKGKGEPLEAGIEISGLEMRMGDKRSWVTLPGSEIETDANGTLTGDIGVLPTLTMSTPVINMAVNGVPTQYMNETHLLHAHSYNFRWTVKVEGGQIS...................................................................................................................................................................................................................................................................................................................... 315
3 -14.900PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  13  1MNKILKTMALLAVPATVAVSCKDDGMDVKFTDKGPEMTIEVRFSIKLNDEFPLSTLKAKLLFDGTSVSDLTIRTKTAIFVPLLKDIPDGTAEINTGLGIT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 122
4 -13.900PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  12  1MKKKLLFILSLTFIGISCFACLDDETKYVTQKKTNYPLTAFAVAVNNVQTGTTSYYHGK--------------DQTTHKIEI-NVITGVDYTLMDGASISPDPATFIQNWQKEQKVTVTT--TYTIVLPKYDETLKDIIFIDDF.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 140
5 -9.550PF16339.5; Q8Y460_LISMO/1-79; Domain of unknown function (DUF4969 topsan)  ali follow..  18  1MKKRGLLLVVLMLFIFLTVACGSSEDNEESGEISTKE---IELTVDDPIIPTDENGEATIEGTVDPKSKLTIDGKA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 74
6 -9.070PF16383.5; R5CWT1_9BACT/1-176; Domain of unknown function  ali follow..  8  1MKKNHFSLMSLAAGVLLFASCAQDGFDEESFDSG---------VYNTQLEAPSTDDIQITASADGTQQTISWPGAGGYHAILTNTTALIDSVYDGTSFAVARVEDNNYELS------LEVL----GNEERNNTGCDPVIKTFNTFAVAFATIPSGSDLCEYFQ---EELVYDLEEG.................................................................................................................................................................................................................................................................................................................................................................................................................... 176
7 -8.820PF12988.7; Q8A4K6_BACTN/14-147; Domain of unknown function, B. Theta Gene description (DUF3872 topsan)  ali follow..  10  1...QIMILCCMAAALFCFTFCSDD-----------QQEYPFTVEAMPVADKIAGGQTVE-----------------RLEITEEGNFSGTLYTL----RYFQPDGNGLLKLEDGTVLKPNDRYLLSEKKFRLYYTSRSTNEAQTIDLYFENNWQDVRQLSFSFNNR............................................................................................................................................................................................................................................................................................................................................................................................................................... 134
8 -8.630PF14262.6; C9AB59_ENTCA/92-357; Carbohydrate-binding domain-containing protein Cthe_2159  ali follow..  11  146..............................................................................................................................................................................................................................................................................................................................................................................AGNYTLNTTEGDGIQANNSEDAEKGYVAIDGGTFTIQSGRDG------------QAETNLSIQSANLTIKTADG--AQSQSLVTDESYKGLKAGGVMTISSGTFAIDSADDSLHANDT................................................................................................ 250
9 -8.240PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan)  ali follow..  12  1......IFSFLTAAGLLFAGCHQPDELLPSVSRNGINSVTAQFVKNNSEGAAEFYGEFKGYPT---------EGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNL--DDNVTVD-----PAVLYMNLNEDTDQLKQKKVYKVRGRIVKSKACLLEELSLPSQ-ETKEVSLIAAGNIEPTGTYRLSYHATISPDPAT----------TVIDWNASPKLTVTAYDGVSKTVYTVKK....................................................................................................................................................................................................................................................................................................................................................... 218
10 -8.040PF06788.13; YNFC_SALTY/1-236; Uncharacterised protein family (UPF0257 topsan)  ali follow..  14  1MKK----PLLLTLLCMILAGCDNPKSLESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEVAKQVTGTLSQEQGKCQLAALPSAGVTWETDDNGFVVSATGKEEYRYDSEGYPLGKTTINSQNTLSVTAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYNPVDCRLVIVDESVK................................................................................................................................................................................................................................................................................................................................................................................................................. 220
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;