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Query: HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNIYNTLGMTKACLCALAVSLVTTGCSDLLDKEPPSAISDGSFWTGEGDAMLALTGCYRFQTGWSHDDFATPQGLLYLDFAGGNGTEKENFSTLMASSNTVATNSNLRWYWGNAYTQIAKYNTFLENITDCPMEESKKEQWSAEVKCLRAYFFLNLAFYYTDVPMPLKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPGGGLast
1 -48.400d3ckca_ a.118.8.6 (A:) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  14  1.......................SFDQQGVFVKGYAMLGVT---GQKGIDGSPDLDGQDEGESGFY-RTTFNCNELPTDECLW--AWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEG--MTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHF----SNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAA 182
2 -17.300d3fdha_ a.118.8.0 (A:) automated matches {Bacteroides thetaiotaomicron [TaxId: 226186]}  ali model 3D-neighbors follow..  16  54.......................................................................................................SSSTFNNSWNGIYSSLKNARIIIDQCGEGG-RDHGNDVTRGMAEVMAAYNCALIADFFGDAPCSQAALVDEKGSPVYMTPKQEIYTQIISYLDDAIANLQKEDLADVGDADKWL 178
3 -16.800d3mx3a_ a.118.8.0 (A:) automated matches {Bacteroides fragilis [TaxId: 272559]}  ali model 3D-neighbors follow..  13  49............................................................................................................GRSGFGGYTTLINAQKMVESV-----SDDNVNAYDGLAHFIKAYKIFYMSMEMGDLPYEEALQGELGLVRPKYNTQKEVMNFILSDLETAYELFSTAKDFDGGSISKW. 156
4 -16.600d4lera_ a.118.8.0 (A:) automated matches {Bacteroides vulgatus [TaxId: 435590]}  ali model 3D-neighbors follow..  16  31...................................................................................................LTSGESKYQVYKWTRGDFDYYS----LRDVTKMSEEAGEGSAYQALAHFFRANYFYQLTLDFGSIPYTDALKAETDANYQPADSQEVVLAGILKELEEADKMLEGSYNGNLVNWRKLI 155
5 -14.900d3sgha_ a.118.8.0 (A:) automated matches {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  17  50...................................................................................................YYNASEGHNDSSWGRLYGYI------YPSFFLVENSTEKKGVIYAMAQLTRVYGMQLLASLQGPIPY---TQMKAGETEAPYDNEQTVWHAMFDDLDNAITILKSAATFGVGDCSKWL 170
6 -14.900d5j90a_ a.118.8.0 (A:) automated matches {Flavobacterium johnsoniae [TaxId: 376686]}  ali model 3D-neighbors follow..  17  29............................................................................LNSDIWSGYMATPTGFESGVNNTTYALLDNWNGFIWDYGYKNV------MFNAYDINKSKGKYDQFYALSLILKVEGMHRMTDTFGPIIY---SKFGSNDATIAYDSQEEVYTQMFAELDTAVAELTKRIDAGEASTFEST 161
7 -14.600d4f53a_ a.118.8.0 (A:) automated matches {Bacteroides ovatus [TaxId: 411476]}  ali model 3D-neighbors follow..  10  2..............................................DWYLVRSLALNLQDLMMPEQENFSQYVDCLMAGAFSGYVADSNLGTGWSGRYATYNPSDDWKKIPFNDFYSKF------YPDYFNL-KNQSDDELFLSLAELYRIVVMLRVTDTYGPIPY--SKVGAANAIKSPYDSQQAVYAKMLEDLDNIITVLGKFGNQSFGNTSAWY 172
8 -14.100d3ehma_ a.118.8.0 (A:) automated matches {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  16  56................................................................................................NEANWNFTDSRMNYAYQNFYSQFLPWNEIYEIAKDS--DSPSEQAILEIANIVRNIAWLRATDVFGPIAY---NSAGDGSIAPKFDSQEVVYRSMLADLSKSVELLNTIYNGNVQNWVKLA 183
9 -12.300d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  1..................................PYE----PDLSADGYALGSAMNNLAGCVVSPDVNTAQFTDCLLGGPLGGYFADSNAGFTETISNFNPKDDWSRVFLKSDKIIPTLYSNLTQVKLVS----QNTNDPVPYAIAQVIKVAAMHRVTDAFGPIPY--SQIGANGEIATPYDSQEVTYNTFFDELNAAIATLNENSNEQLGDVKKWI 183
10 -7.670d5itaa_ d.144.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  18............................................................................................................SGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGQLAIVTQWCEGSSLYHHLHASETKF--DIARQTARGMDYL............... 120

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 6 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.