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Query: HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LLGITNVPDKKNYAIDELGLSAQAARNLYAGKANAQVVNYLLESPRFLDLTYILEQYFNDTVAAGYAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLVTIENQFMLAVKEVKKEIGNDFAAMQSMTAEAAKRMFTEVAKGQDMTNPTITPEQVSDLIYRSVAGLDGCHRDALNTLGQALTGFFQNHLRAAQYRRKAMKRQDNEQLCALAQKGTQSSLast
1 -6.340d2cf7a_ a.25.1.1 (A:) automated matches {Streptococcus suis [TaxId: 1307]}  ali model 3D-neighbors follow..  3..FSPRPSLADSKAVLNQAVADLSVAHSILHQVHWYMRGR---HPKMDEYMEEIDGYLA-EMSERLITLGGAPFSTLKEFSENSQ-------LKEVLGDYNVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEK............................................................................. 144
2 -6.240d2c2ua_ a.25.1.0 (A:) automated matches {Deinococcus radiodurans [TaxId: 243230]}  ali model 3D-neighbors follow..  10  9....AHLGTVNNALVNHHYLEEKEFQTVAE-TLQRNLATTIIRGRFFRDLHLAYDEFIADEQAERLVALGGSPLAAPADLARYSTVQVPQETVRDARTQ--------VADLVQDLSRVGKGYRDDSQACDEANDPVTADMYNGYAATIDKIRWMLQAIMDDERL............................................................... 177
3 -6.190d5hjfa_ a.25.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 272131]}  ali model 3D-neighbors follow..  1....TQTLLRNFGNVYDVLLDRSVTAPVTE-GFNVVLASFQVEGSEFYSLHEFFNESYNHEIGERLDGLGGVPVATFSKLAELTCFEQESEGVYSSRQM--------VENDLAAEQAIIGVIRRQAAQAESLGDRGTRYLYEKILLKTEERAYHLSHFLAKDSLTLGFVQA........................................................ 178
4 -6.110d1moja_ a.25.1.1 (A:) Dodecameric ferritin homolog {Halobacterium salinarum [TaxId: 2242]}  ali model 3D-neighbors follow..  13  17...............DALRMDADRAEQCVD-ALNADLANVYVEGAEFRDLHLFLGEAAEDELAERVQALGGVPHASPETLQAEASVDVEDEDVYDIRTS--------LANDMAIYGDIIEATREHTELAENLGDHATAHMLREGLIELEDDAHHIEHYLEDDTLVT............................................................. 176
5 -6.110d3iq1a_ a.25.1.0 (A:) automated matches {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  6.IGLDTTQSQKLANALNNLLANYQVFYMNTRGYHWNIQGK---HAKFEEIYTDLQLKIDE-LAERILTLSARPMHSFSGYLKAAQIKEHTDSIDGRSS---------MQGLVDGFSILLHQQRDILELAGETGDEGTSALMSDYIREQEK............................................................................. 146
6 -5.800d2pyba_ a.25.1.1 (A:) Dodecameric ferritin homolog {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}  ali model 3D-neighbors follow..  13  1.....DDLDAIQLKLQEL-LASLHIFYSNLRGIHWNIKDT---HKKTQKLYEYIEKIID-IVAERSRMLGYDSEFRYSEFMKKSF-------IKELDIESTSNFLPSMESIVCSLTEILKNIFGMRKLIDTAGDYGTANIMDDIMSDLEK............................................................................. 138
7 -5.530d3kwoa1 a.25.1.0 (A:1-147) automated matches {Campylobacter jejuni [TaxId: 192222]}  ali model 3D-neighbors follow..  10  4..............TKQLLQADAHHLWVKFHNYHWNVKGLQF-HEYTEKAYEEMAELFD-SCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEV--------IELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEK............................................................................. 134
8 -5.380d5hdka1 a.4.5.0 (A:7-110) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12......VEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMY.......................................................................................................................................................................... 62
9 -5.280d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  21.LGKKFSEIQINSFISQLITSKESVANANTDGFDFNLLTINSEHKNSPSLNKQPELYFVVTFAEQTLELNQETQQTLALVLKLWNS--------HLSESILKNRQGQNEKNKHNYVDILQGIEDDLKK................................................................................................... 150
10 -5.180d3t9ja_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}  ali model 3D-neighbors follow..  11  4..............FEILKQADAIVLFMKVHNFHWNVKGT---HKATEEIYEGFADMFDD-LAERIAQLGHHPLVTLSEALKLTRVKEETKTSFHSKDI--------FKEILEDYKHLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQK............................................................................. 134

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.