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Query: HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKEHKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNLYADRTLWNTMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHNGILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVTKLLKYANPLSENGGESLMRGQITELSFGSSCWQCSSLast
1 -13.000d1zela2 d.377.1.1 (A:83-294) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  15  5.................................................................LRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPLDLVAWATGLPALGPEALLVQIATRPWADLVPHLDDLVAD--CSDERLERLLSGRPTSAQRASYLL-------DSGGEPARGQALLA............ 167
2 -7.800d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1...........................................................................................................................................ADQLLRKKRRIFIHSVGLLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDLVTGKGPKSCCKFIKHLCEEDPQLASKMGLH. 89
3 -6.430d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  9  22...............................VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE--------VFPEFKLGLMHG----------------------RLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRA----NVMVIENPERFGLAQLHQLRGRVGRG----GQEAYCFLVVGDVGEEAMERLRFFTLNTDGFKIAEYDLK. 174
4 -6.110d5diib2 d.58.56.0 (B:119-205) automated matches {Haliangium ochraceum [TaxId: 502025]}  ali model 3D-neighbors follow..  10  6.................................................................................................................................................VETATVCAAIDSADAALKTAPVVLRDMRLAIGIAGKAFFTLTGELADVEAAAEVVRERCGARLLELACIARPVDELRG 83
5 -5.940d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}  ali model 3D-neighbors follow..  16  1....................EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKA--LNPGKVFFTGDAKVELRG------------------------------------EHLILEGIWFKDGNRAIQAWK............................................................................ 89
6 -5.360d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  9  77......................................SPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNE----VTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDP...... 251
7 -5.120d2qn6b_ d.58.51.1 (B:) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  14  17.....................................................................................................................................................................................GVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYRVDVVG 58
8 -5.080d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  110......LEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGI--KVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIA-VARIMMPTSYVRLSAGREQ--MNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDK-----DLQLFRKLGLNPQQ..... 311
9 -5.060d2d28c1 d.52.10.1 (C:1-149) Type II secretion ATPase XpsE {Xanthomonas campestris [TaxId: 339]}  ali model 3D-neighbors follow..  11  10............................................................................................................................................................IVEALLERRRLKDTDLVRARQLQAESGMGLLALLGRLGLVSE---RDHAETCAEVLGLPLVDAR... 70
10 -4.970d3f66a_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  28..............................HFNEVIGRGHFGCVYHGTLLDNDG-KSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGI-CLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFKGMKYLASKKFV-DLAALDEKFTVKVADFGLARDMYDKEYYSV------HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGV......... 220
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.