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Query: HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDEKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVGGDIEMTYPFDDEVGILLNGNGKFEGLPLNRALYDDHGQVYDAIAGTFLVVGLTEDDFTSLTPEQIEKFKEKYQSPEIFTLFNGELHVMKMPPEEEKEQKESRKNDAKQKNPAKKKNRSGDARLast
1 -6.890d3w5ha2 c.25.1.1 (A:1126-1272) cytochrome b5 reductase {Pig (Sus scrofa), liver [TaxId: 9823]}  ali model 3D-neighbors follow..  10  42.......KDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYA--ERVGHPKERCFAF...................................................... 147
2 -6.860d2vpia1 c.23.16.0 (A:25-219) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  33.LETPAFAIKEQGFRAIIISGGIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFSVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESKKLYGAQFHPEVGLTENGKVI..................................... 178
3 -6.690d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  1FTPFPPRQPTASARLPLTLMTLDDWALATIADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGK--------------------MWSNLRLFRDGDGFAWIERRSVREPQLTELKK................................................ 98
4 -6.050d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}  ali model 3D-neighbors follow..  16  35GAEVIIERLQHMEQPVLMLSPGGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKAIAHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARFGEMVMAVRDDRRRVCGFQFHPESILTTHGARL..................................... 181
5 -5.940d3lfha_ c.54.1.0 (A:) automated matches {Thermoanaerobacter tengcongensis [TaxId: 273068]}  ali model 3D-neighbors follow..  19  24................VIIGKQENVHTVGLGDNIEVVRKEVEKIIKEKLQEDKEIIIVVDLFG---GSPFNIALSMMKEYDVKVITG--LLTSINVYDTTELLENISKIGKDGIK................................................. 127
6 -5.890d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  2...........TTITGVVLAGGKARRMGGVDKGLLELKPLWQHVADALMTQLSHVVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGDTPYIPPDLAARLNHQRKDAPVVWVHDGE...................................... 126
7 -5.570d1sh8a1 d.38.1.5 (A:1-150) Hypothetical protein PA5026 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  11  24.............LRAEVLEPGYVRLRMPGAGNENHIGSMYAGALFTLAELPGGALFLTS----FDSARFYPIVKEMTLRFRRPAKGDIRVE-------ARLDAERIRQLETEAGE................................................ 115
8 -5.480d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  2............RPSAIVLAGGKEAWAERFGVGSKALRPMVEWVLEALYAAGLSPVYVGENPGLALTLPDRGGLLENLEQALEHVEGRVLVA---TGDIPHLTEEAVRFVLDKAPEAALVY........................................... 116
9 -5.460d4le5a2 d.130.1.0 (A:118-243) automated matches {Campylobacter jejuni [TaxId: 195099]}  ali model 3D-neighbors follow..  12  62.TKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLILDSNLPKELFDPNKTRILINPTGKY................................................................................................... 125
10 -5.260d3zhoa_ c.23.5.8 (A:) automated matches {Escherichia coli [TaxId: 405955]}  ali model 3D-neighbors follow..  12  2..............KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQ........................................................... 92

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.