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Query: HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NQDSWQKWNAEYEFRYQLMHGLISLRAALGMDYCDSRAADYHHTHCNLYAVVNAQAAYKCMALTFNLRTHRPTLYGETLALGEDLHDIALTYFKKRFSLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKGNKLast
1 -10.900d2x55a1 f.4.4.0 (A:4-292) automated matches {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  100ATNVNHANEYDLNVKGWLLDENYKAGITAGYQETRFSVIGYNQRFSMPYIGLAGQYRINDFELNALFKFRDLTFREKTSGSRYYGTVINAGYYTPNAKVFAEFTYSKYDEGKGGTQTIDSVSIGGDAAGISNKNYTVTAGLQYRF........................... 289
2 -10.100d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}  ali model 3D-neighbors follow..  143SEDDAQEMAVAAAYTFGNY--------TVGLGYEKIDSPDTALMADMEQLELAAIAKFGATNVKAYYADGETPVAAAATAVDHKAYGLSVDSTFGATTVGGYVQV--------------------LDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMGV..... 297
3 -9.390d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]}  ali model 3D-neighbors follow..  12  157SSLVTEEFGIAADWSND------MISLAAAYTTDAGGIVDND------IAFVGAAYKFNDAGTVGLNW------YDNGLSTAGDQVTLYGNYAFGATTVRAYV----------------------SDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETDVGV..... 285
4 -8.830d3qraa_ f.4.1.0 (A:) automated matches {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  24...DKNPRGFNLKYRYE-FNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFRINEYVSLYGLLGAGHGKAKFSSIFGQSESRSKTSLAYGAGLQFNPHPNFVID-------ASYEYSKLDDVKVGTWMLGAGYRF........................... 157
5 -8.380d1po0a_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  497ARGKTRHTGLETQARYDLTLDNVSIYASYAYVNAEIREKGDTYGNLKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESAWGARVAYQMADLNLAFGVKNIFDQDY------FIRSYDDNNKGIYAGQPRTLYMQGSLKF........................... 661
6 -7.870d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  31...HENKLGAGAFGGYQ-VNPYVGFEMGLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDLDIYTRLGGMVWRADTYSNVYGKNHDT--------SPVFAGGVEYAITPEIATRLEQWTNNIGDAHTIGTRPDNGMLSLGVSYRFG.......................... 171
7 -7.830d3sy7a1 f.4.7.1 (A:1-420) OprD porin (OccD1) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  211.....RQYYLNSNYTIP-LASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKANSVQYSDFNGPGEKSWQARYDLNLASYGLTFMVRYINGKDIDGTKMSDNNVGYKNYGYGEDGKHHETNLEAKYVVQSGPAWHRANADQGEGDQNE....... 408
8 -7.510d3syba_ f.4.7.1 (A:) OpdP porin (OccD3) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  11  247.....NQYYLGVTHDIGDLENGIALRTAFNGYHTGDTGAREAGYIDNDTWSLAFTLGHRAHALTLAYQFLANSMLADYNSPNEKSAQIRYETDWSYYGVGLSTGVWYVKGWDIDGTHYDGDRNGAYGNYDGEKHHELGLMAAYKVQNGPMMHKASQNQIDGSVNE....... 440
9 -6.940d2vdfa_ f.4.4.2 (A:) Outer membrane adhesin/invasin OpcA {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  10  77TGVPENRIDLYTGYTYTTLSDSLNFRVGAGLGFESSKDSTLHSSRQSWLAKVHADLLSQGWYINPWSEV-KFDLNSRYKLNTGFGLGANIGKKGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF........................... 247
10 -6.810d5dl7a_ f.4.7.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 557600]}  ali model 3D-neighbors follow..  207.....QQQFLGFNGKQP-LNDQLNFLSDVRFFNSEETGSKKIGEVDNRHISGLFGLNYQNHTVSLGYMQ-LDFMSSDYSNKDEKVYSIRYEYDFKNARIG------LNGLRFMTRYAKGEDIDLLQYGDQRFKEDSLEFDLGYKIPEGKGLGRARFSHYRNDMPTNMTFHS. 388

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.