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Query: HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDMTDNNDDVLVKKFFSENRIDVPDDGFSRRVMRRLPDRTRRISRLWTAVCVVIGLLIFFRNKGFSVLVSCFDGIFSDVLARHEQLNNPHLLLPVAMVLILLWGVGFAVRERLast
1 -6.990d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  12  3........SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFL................. 89
2 -5.950d1tqga1 a.24.10.3 (A:4-104) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  10  1.........EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIF................. 86
3 -5.860d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  5....TDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIR................................................................... 45
4 -5.750d1igna2 a.4.1.6 (A:446-594) DNA-binding domain of rap1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  50...MTMDPNHVPGSEPNFAAYRTQSRRIAREFFKHFAEEHAAHTNAWR................................................................ 97
5 -5.450d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  15  12RQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGL........................................ 83
6 -5.420d3alua_ d.169.1.0 (A:) automated matches {Cucumaria echinata [TaxId: 40245]}  ali model 3D-neighbors follow..  10  52ASIHSAESQAFLTELVKTSLPDLITGGWAPQVYIGMKVGSTNSDQTWT................................................................ 99
7 -5.170d2cxya_ a.4.3.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  5TKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF................. 99
8 -5.120d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  2.ELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGS................................................. 63
9 -5.100d4mrta2 d.150.1.1 (A:102-224) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  19  7IEKTKPISLEIAKRFFSKTEYS---------DLLAKDEQTDYFYHLWSSFIKQEGKGLSLPLDSFSV............................................. 69
10 -5.090d1fjgr_ a.4.8.1 (R:) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  28  14FDLRDYRNVEVLKRFLSETGKILP-TGLSGKEQRILAKTIKRARIL.................................................................. 61

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.