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Query: HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VRGRIVRLRGARAPLGRGRGAASGALSDERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAGPVDDPLast
1 -6.700d4bvna_ f.13.1.3 (A:) automated matches {Turkey (Meleagris gallopavo) [TaxId: 9103]}  ali model 3D-neighbors follow..  14  2.................................SQQWEAGMSLLMALVVLLIVAGNVLVITQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASVETLCVIAIDRYLAITSPFR.. 113
2 -6.560d3emla1 f.13.1.4 (A:3-208,A:222-310) Adenosine A2A receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  1..................................IMGSSVYITVELAIAVLAILGNVLVCNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHG--CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLR.. 109
3 -6.340d4rhaa_ d.79.7.0 (A:) automated matches {Salmonella enterica [TaxId: 99287]}  ali model 3D-neighbors follow..  13  65..........................................................LSEKRAQSVVDYKGIPSDKISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVK........................ 127
4 -6.330d1elva2 g.18.1.1 (A:342-409) Complement C1S protease domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  12......................................................................GKVEDPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGS---------------EVLGPELPKCVPV... 68
5 -6.150d1dqga_ b.42.2.2 (A:) Mannose receptor {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  5  1............................DARQFLIYNEDHKRCV--------ALSAISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDWASVTLYACD................................... 72
6 -5.650d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  14  18........................................................................................CAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVFIGGKHIG..... 66
7 -5.540d1tuea1 c.37.1.20 (A:428-629) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}  ali model 3D-neighbors follow..  10  59...........................ANTGKSYFGMS-----------FIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRN---------LDGNPISIDRKHKPLIQLKCPPILLTTNIHP.... 150
8 -5.440d5gv0a1 b.180.1.0 (A:208-368) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  87.......................................................RLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNECVQDG................................ 161
9 -5.420d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  134..............................GNGIVGAQVPLGAGIALAVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTASTDYYKRGDFIPGLRVDGMDILCVREATRFA-----AAYCRSGKGPI... 251
10 -5.340d1ccza2 b.1.1.3 (A:94-171) CD2-binding domain of CD58, second domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  15............................................ATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP................................... 77
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.