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Query: HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPYRLLPNTDQARIRALKTAVVKGDMCDVYDLPVSLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLYISHFIQVLNLAVIRMEIKESHKALYGLPVDNFSVPDLSSEASLAEWGQKIIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKCRDYGLIIIIGPEKNRIRRFFKICLSIHIPIFFWKSLQKITFRYGTCPCCRCDAYLYALast
1 -6.310d1huwa_ a.26.1.1 (A:) Growth hormone, somatotropin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  5...........................................PLSRLADNAWLRADRLNQLAFDTYQEFEEAYIPKEQIHSFWWNPQTSLCPSESIPT---------PSNKEETQQKSNLELLRISLLLIQS------------LEP--------VQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTSKFDTNSHNDDALLKNYGLLYCFNKDMSKVSTYLRTV--------------QCRSVEGSC........... 189
2 -6.190d4rnaa2 d.3.1.23 (A:62-322) Papain-like protease PLpro, catalytic domain {Human betacoronavirus 2c EMC/2012 [TaxId: 1235996]}  ali model 3D-neighbors follow..  13  1..............................................................................................ADETKALKELYGPVDPTFLHRFYSLKAAVHGWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALPDDASRLLHTVLAKAELCCSARMVWREWCNVCGI------------------DVVLQGLKACCYVGVQTVEDLRARMTYVCQCGG.... 169
3 -5.970d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  1........................................................................................................................................................................................................................EMYGVNYFAIRNKKGTELLLGVDLHIYDPSFPWNEIRNISYS............... 53
4 -5.790d3nfta_ a.250.1.1 (A:) Putative membrane antigen BipD {Burkholderia pseudomallei [TaxId: 28450]}  ali model 3D-neighbors follow..  11  95....................................PILQGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYIS------NMKIDGGKIKALIQQVI----DHLPTMQLPKGADIARWRKELVTINPDKLIKMRDSLPPDGTVWDTARYQAWNTAFSGQKDIQNDVQTLVEKYSHQNSNFDNLVKVLSGAISTLTD..................................................................... 269
5 -5.770d3n0pa_ a.26.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  2............................................LRDLFDRAVVLSHYIANLSSEMFSEFDKRYTHGRGFITKAINSCH-------------------TSSLATPEDKEQAQQMN-QKDFLSLIVSILRSWNEPLYH---------VTEVRGMQEAPEAILSKAVEIEEQTKRLLERMELIVSQVHPETKENLPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKL-------------LKCRIIHNNNC........... 186
6 -5.760d3dplr_ g.44.1.1 (R:) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  60.....................................................................................................................................................................................................................................................AFHFHCISRWLKTRQVCPLDNRE..... 82
7 -5.620d5kzaa1 a.61.1.4 (A:2-92) automated matches {Rous sarcoma virus (strain prague c) [TaxId: 11888]}  ali model 3D-neighbors follow..  13  2......................................................................................................................................................AVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKLMSPSDLYSPGSWDPITAALSQRAMILGKSGELKTWGLVLGALKAAREEQV....................................... 88
8 -5.450d1dj7a_ g.36.1.1 (A:) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  17  1................................................................................................................................................................................................................NNKTLAAMKNFAEQYAKRTD--YFCSDLSVTAVV-------EGLARHKEELGNCPCCHCMLFL.. 85
9 -5.370d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}  ali model 3D-neighbors follow..  90..................................................................................................................................................................................VSTRDCEPVFGYTVAGEFRVIVQAPRAGFRQCVWQHKCRFGSNSCGYNGRCTQQRSVVRLVT---------DGFLCESFRTCCG--CPCRSF... 175
10 -5.250d4e3ya_ d.4.1.2 (A:) Sm endonuclease {Serratia marcescens [TaxId: 615]}  ali model 3D-neighbors follow..  11  1.........................................................................................................SIDNCAVGCPTGGSSNVSINWVAYHITKDTPASGKTRNWKTDPALPADTLAPADYTGANALASLAGVSDWESLNYLSNITPQKSDLNQGAWARLEDQERKLIDRADISSVYTVTGPLY-----ERDMGKLPGTQKAHTIPSAYWKVI..................... 170

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.