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Query: HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKLVKLILLCLIAYPIISIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENLKLFYRNLast
1 -7.480d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  8......................................KYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIF-----FDSFD--NDGKKNNPAIVVVG.... 128
2 -7.260d2i79a_ d.108.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 170187]}  ali model 3D-neighbors follow..  10..............................AEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQL---TVQTRNQAAVHLYQK. 141
3 -7.110d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}  ali model 3D-neighbors follow..  11  111...................VIYECNSFCSCSMECPNRVVQRFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRD-----NYDDDGITYLFDLDMFDDASEYTVAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIK-DIQPLEELTFDYA. 260
4 -6.670d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]}  ali model 3D-neighbors follow..  16..................VMVDGCHGSDPCIRGKPFTLEALFDANQNTKTAKIEIKASLDGLE-----DVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPKSENVVVTVKVGDNGVLACA.......................................... 120
5 -6.660d3c22a_ d.169.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23........................SAEQFCVSRNSHLTSVTSESEQEFLYKTAGGLIYWIGLTKAGMEGDWSWVDDT------PFNKVQSARFWIPGEPNNAGNNEHCGNIKAPSLQAWNDAPCDKTFLF.................................... 122
6 -6.490d1kpta_ d.70.1.1 (A:) Virally encoded KP4 toxin {Ustilago maydis, P4 strain [TaxId: 5270]}  ali model 3D-neighbors follow..  10  3.....................INCRGSSQCGLSGGNLMVRIRDQACGNQGQTWCPGERRAKVCGTGNS--------------------------AYVQSTNNCISGTEACRHLTNLVNHGCRVCGSDPLYAGNDVSRGQLTVNYVN.................... 103
7 -6.390d3ma2b_ b.40.3.1 (B:) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  2......................TCAQTAFCNSDLVIRAKFVGTPEVNQTTLYQRYEIKMTKMYGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHITL--------------CSFVAPWN-------------------SLSLAQRRGFTKTYTV 122
8 -6.170d2vi7a_ d.108.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  20...............................................NDPAVARQVLQMPYQSVEQRRKRLHDSADDDRLLILVALHQGDVIGSASLEQHPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLDIADNWMNLRRVEL---TVYTDNAPALALYRK. 134
9 -6.090d3hnaa1 b.85.7.0 (A:951-1235) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  120...................LIFECNHACSCWRNCRNRVVQNYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEAD----------VREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTR-LIEAGEQLGFDY.. 261
10 -6.050d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}  ali model 3D-neighbors follow..  100...................PIYECHQGCACSKDCPNRVVERFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPL-GEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIK-DIPKGTELTFDYV. 260

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 4 4 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.