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Query: HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYFGAILCKKARQLRVYKAFGGRRHTEGRCSSIDENGKSRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLGGDMDMTRDEYSKMRGSSVREVSATHGTISFKDVMVFYKEDLast
1 -9.990d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  16  2....................................ELIRFSISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDFIIRHEWEVG.................................................................................. 50
2 -9.980d2wvfa1 a.43.1.0 (A:9-60) automated matches {Helicobacter pylori [TaxId: 85962]}  ali model 3D-neighbors follow..  18  3......................................IRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNP................................................................................ 51
3 -9.260d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  2......................................QRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQH.................................................................................. 48
4 -8.390d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}  ali model 3D-neighbors follow..  20  2.....................................KKRLTITLSESVLENLEKMAREMGL-SKSAMISVALENYKK......................................................................................... 41
5 -7.740d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319) {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  14  1...................................TTLPRITARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAKQVIEREQALKLSQADAVLLMEALDN................................................................ 68
6 -7.270d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  30.................................SSGKIKRVNVNFDEEKHTRFKAACARKG-TSITDVVNQLVDNWLK......................................................................................... 73
7 -6.510d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  24.LIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAK-AFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLIYELKQR................................................. 145
8 -6.450d2gpea_ a.43.1.11 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  5........................................MGVKLDDATRERIKSAATRID-RTPHWLIKQAIFSYLEQLENSD................................................................................... 47
9 -6.050d3brja1 a.285.1.1 (A:6-172) Mannitol operon repressor MtlR {Vibrio parahaemolyticus [TaxId: 670]}  ali model 3D-neighbors follow..  11  1...............................................................NESEIIERLNSAPSVRGFFIATVDVFNESIDGLIQRIFRKDNFAVQSVVLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYE............... 101
10 -5.950d2hkta_ a.285.1.1 (A:) Putative transcriptional regulator YggD {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  5...............................................................TEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEEIVEYAIDVALRLIYALGKMDKWLYADITHFSQYWHYLNEQDETPG............... 106

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.