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Query: HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQVDTKLINLKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCGDCLDLERCPTVGEILENNPSALKNLKGLast
1 -9.560d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  146WSHWLLGLEEGAVVETESRTLCPACGLSCSLC-------------------------ACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGY...................... 244
2 -7.930d5gmkf_ d.395.1.1 (F:) Pre-mRNA splicing factor Cwc16 / Yju2 {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}  ali model 3D-neighbors follow..  13  25...KMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKSRKFNGKKELLKEK--YLDSIKIYRLTISCPRCANS..................................................... 93
3 -7.730d3lxfa_ d.15.4.0 (A:) automated matches {Novosphingobium aromaticivorans [TaxId: 279238]}  ali model 3D-neighbors follow..  13  15IQAEPGLSLMEALRDAGIDELLALCGCSCATCHVLVA--PAFADRLPALSGDENDLLDSSDHRTPHSRLSCQ....................................................... 86
4 -7.540d2bq4a_ a.138.1.0 (A:) automated matches {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  19  37.........................AAACQKCHHKWDGKSADTTSFKATEKDPKFLMTAFHSKSPMSCQGCHK------------EMKTAKKTTGPTACAQCHN....................... 114
5 -7.330d3ah7a1 d.15.4.0 (A:1-108) automated matches {Pseudomonas putida [TaxId: 303]}  ali model 3D-neighbors follow..  16  24.......TNILELAHDHHIEMESACGKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLEAQSRLGCQ.......................................................... 87
6 -7.290d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  15  88LGTFGELSNIEQVVAVIDEEMCINCGKCYMTCN-------------DSGYQAIQFDPETHLPTVTDTCTGC-----------TLC-LSVCPIIDCIR.............................. 159
7 -7.220d5uj5a1 d.15.4.0 (A:5-132) automated matches {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}  ali model 3D-neighbors follow..  10  33.......STVLDVAHKNGVDLEGACELACSTCHVILE--EPLYRKLGEPSDKEYDLIDQAFGATGTSRLGCQ....................................................... 97
8 -6.910d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  23...............................................................LGIPCNNCKQFPIEGKCY----------------KCTECIEYHLCQE................. 53
9 -6.860d2h88b2 a.1.2.1 (B:115-246) Succinate dehydogenase {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  9  26...EQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEER--------------------LAQLQDPFSLYRCHTIMN-RTCPKGLNPGKAIAEIKKMM.. 128
10 -6.730d1y0pa1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]}  ali model 3D-neighbors follow..  14  11.........................NQECDSCHTPDGELSNDSL-----------------TYENTQCVSCHGTLAEVAETTKACTSCHSAHEKSMVYCDSCHS....................... 87
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.