current user: public

If you have questions about the server, please let us know.

Query: PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217], from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310
# Score Template Links and tools%idFirst MNTETLTYLLEHPDKITSEETTQLRTVVEEFPFFQAARALHLKGLKNEDSFLYNTYLKKTAAHTQDRTVLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASASDKTEASSENTIIEETASETPLELETTIPSIEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQKNFSKAKQAYRILSLKYPEKSGFFADQIRAIEKLQENLast
1 -7.020d2v5fa_ a.118.8.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  36.............................................................................................................................................................................................................................................................EGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPENLKYFEYIMAKEKD.... 97
2 -6.970d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}  ali model 3D-neighbors follow..  2........................................................................................................................................................................................................................................................SVYDAAAQLTADVKKDLRDSWKVI--GSDKKGNGVALMTTLFADNQETIGYF-KRLGDVSQGMAN 63
3 -6.940d4e9ea_ a.96.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  25............................................................................................................................................................................................................................................................................IATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKP 69
4 -6.880d4kbqa_ a.118.8.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  7..........................................................................................................................................................................................................................................................................KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ. 52
5 -6.560d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  2..............................................................................................................................................................................................................................................................PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRLGDATRAIE. 72
6 -6.380d3eska1 a.118.8.1 (A:223-349) Hop {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  7..........................................................................................................................................................................................................................................................................KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQRELCEKAIE. 65
7 -6.300d1nzna1 a.118.8.1 (A:4-124) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  77............................................................................................................................................................................................................................................................................LAVGNYRLKEYEKALKYVRGLLQTEPQNNQ--KELERLIDKAMKK 120
8 -6.290d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  14  4.................................................................................................................................................................................................................................................................TQEERDEISKTFQGTDMKT-----VTQALDRMFKVYPWTNRYFGIVVGALQDAVKH 67
9 -6.190d3o48a1 a.118.8.1 (A:5-127) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  79............................................................................................................................................................................................................................................................................LTIGCYKLGEYSMAKRYVDTLFEHERNNKQ--VGALKSVEDKIQK 122
10 -6.180d2vsna1 a.118.8.1 (A:22-192) O-GlcNAc transferase, OGT {Xanthomonas campestris [TaxId: 314565]}  ali model 3D-neighbors follow..  18  72...........................................................................................................................................................................................................................................................................WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL... 114

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 8 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.