current user: public
If you have questions about the server, please let us know.

Query: PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .
# Score Template Links and tools%idFirst MCTTNAVNEKISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYIFGMSVTKDNASRGEIFEGSRNLKATMSRPSGDAPWNWEFSNNASGTVVTPRGPEGKPLRVIAYYPAIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYDFLVPAFMDRNVKDDDLVFTLIIDGKKEIFSLGREHLNNDGDTYGFKQGYANTYNVEFNNSSLNMRLLNWTSTRIDGDFGQNVTNPTNYQEMSFYYAEDNGGWTTALast
1 -6.810d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  42..........................................................................................................................................................................................................................................................................................................ELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSP.................................. 98
2 -6.580d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  7  25................................................................................................................................................................................................................................................................................................YPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYYSSSWSEWASVP................................ 93
3 -5.960d3f8ba_ a.4.5.0 (A:) automated matches {Lactococcus lactis [TaxId: 416870]}  ali model 3D-neighbors follow..  5  1................................................................................................................................................................................................................................................................................................PKEMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTYRLTIGHENMRLAFESWSR.................................. 94
4 -5.880d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  35........................................................................................................................................................................................................................................................................................................HLTYAVNIWSENDPADFRIYNVTYLEPSLRITLKSGISYRARVRAWAQAYNTTWSEWSP.................................. 96
5 -5.860d1m3ya2 b.121.2.3 (A:222-437) Major capsid protein vp54 {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}  ali model 3D-neighbors follow..  13  4..................................................................................................................................................................................EYLIEQGSETATPSATTQASQNIRLNFNHPTKYLAWNFNNPTNYGQYTALANIPGACEQLAVLDSAKIQL-NGQDRFATRKGSYFNKVQPYQSIGGVTPAGVYLYSFALKPAGRQPSGTCNFS---RIDNATLSLTYKTCSIDATSPAAVLGNTETVTANTATLLTALNIYAKNYN................................... 201
6 -5.840d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  6  37.........................................................................................................................................................................................................................................................................................................LRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSP.................................. 94
7 -5.430d1kxpd2 a.126.1.1 (D:215-404) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  120VCDPGNTKVMDKYTFELSRRTHLPEVFLSKVLEPTLKSLGECCDVEDSTTCFNAKGPLL.......................................................................................................................................................................................................................................................................................................................................... 178
8 -5.260d2fd6u1 g.7.1.3 (U:1-80) Urokinase plasminogen activator surface receptor uPAR {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  23LCRTTIVRLWEEGEELELVEKSYRTGLKITSLTEVVCGLDLCNQGN....................................................................................................................................................................................................................................................................................................................................................... 80
9 -5.140d4qcic_ g.17.1.1 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  6ECKT----RTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQ--RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA.............................................................................................................................................................................................................................................................................................................. 87
10 -5.080d1eerb2 b.1.2.1 (B:117-220) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  4  29................................................................................................................................................................................................................................................................................................PPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSLRGRTRYTFAVRARMAEPSFG-SEWSE.................................. 98
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.