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Query: PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDSLFWAIDIKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIGGNNSFPHEIGLFIGYPAKDVAAFMGLVRLPFTCQRLWKIYGNPARSLALAEQYRCCRNKMGAILARGTSKTLEIDRSDHPFFCQTDENDYQYLPLast
1 -6.500d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  1.....................................................................KPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSES-------------MGFRYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVKDVEGL....................................................................... 121
2 -6.350d3g14a_ d.90.1.0 (A:) automated matches {Clostridium novyi [TaxId: 386415]}  ali model 3D-neighbors follow..  7........................IKKRKSIKKFEQTAIDRDKLLKIID---------MAMRAPSWKNKTPYKFIVVESDKLKLDIANAIENKTSAASEAVLNSPMTIVAVANPEESGDVSGKEIYLIDTAIAMEHIVLGATDEGYGTCWIAAFNENKIKEALKIPDNLRVVALTPLGVPKDSAEDEPHHPKKDMDEYLYIDKWGTSFMESN.............................................. 185
3 -5.990d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  1VLESIISPVTMSEFLEEYW-----------------------------PVKPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEGITDRFLVSPAEALEWYEKGAALEFDFTDLFIPQVRR--IEKLKAELRLPAGTSSKAIVYA-----------KNGGGFKAHFDAYTNL-IFQIQGEK-----TWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLP 212
4 -5.990d3a9sa2 b.43.2.0 (A:361-590) automated matches {Geobacillus pallidus [TaxId: 33936]}  ali model 3D-neighbors follow..  2...QIF--ADVRTYWS-GYTLEGRAANGIIHLINSGAAALDGTGEQTKDGKPVIKPYYELTDEDIKKCLEATQFRPASTEYFRGGGYSTDFLTKGGMPVTI------SRLNIVKGLGPVLQIAEGYTVDLPEEVHDVLDKRTDPTWPTNLTGEGAFKDVYSVMNNWGA--NHCSISYGHIGADLITLASILRIPVNMHN-WSMFGTKDLE----ADYRACKK.................................... 229
5 -5.950d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  1.....................MNEVIKSLTDHRSIRSYTDEPV------AQEQLDQIIAVQSAPSSINGQQVTVITVQDKERKK-----KISELAGGQPWIDQAPVFLLFCADFNRAKIALEDLHDAVDAGIALGTATAAAESLGLGT-----GAVRGNPQELIELLELPKYVGLVIGHPADRSA---KKPRLPQEAVNHQETYLNQDELTSHIQAYDEQMSEYMNKRTNGKETRNWSQSIASYYERLYYPHIREML. 240
6 -5.810d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  12  12......................................................................................................PSGLMAAIGAAEEGANVLLLDKGNKLGR--------KLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSA--FSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQ............... 142
7 -5.690d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  1..........................................................................................................................................SHGGITMWRGVTEFDRFLDGKTMIVANDEHWSR----LVAYPISAVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQ...................... 106
8 -5.570d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  90...AVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEP---LDAERMHRAAQCLLGENDFTSFRAVQCQSRT-----------------PWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAA-KDRTLAAATAKAE-GLYL-YP.............................................................................. 247
9 -5.530d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]}  ali model 3D-neighbors follow..  10  111IDNKMYVILNT----HHDVKGYFPSSQYMASSKKYITSVWAQIAARFANYDEHLIFEGMNESINCINQLNQDFVNTVRATGGKNASRYLMCPGYVASPDGATNDYFRMPNDISGNNNKIIVAYCPWNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSRG-IP-ECGAVDKNNLKTRVEYMSYYVAQAKARGLWD-NNNFSGTGELFGFFDRRSCQFKF................................ 364
10 -5.450d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  1.......................SATTTNLKEAIVNRRSIRKVTKNDAITKERIEEVLTALHAPTSFNMQSGRMVVLMDGEHEKFWDIVKETLRARVPAENFEATVERLKGFHAGVGTVLFFEDQATVEKMQENAPLYKWMLLSAEGIGASLQHYNPIVDAEVKETWNIPAEW-MPFGEPTEDVVKF....................................................................... 198

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205