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Query: PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492], from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RQSEDSRHSKYVIRIICEGEKTEPLFFTSLCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAFEEAEKLIDDKKVNIAFSSRSFEYYLLLHFEYLYHPFHATECGERIDGKKVNYNCMTEKSKENACHGEKCINGYARLKKYWNETKTSQSTFPLIEKRLKAGIINAKRLRIESNSKENCPIYDRNPYTNVDKLVCRLLast
1 -6.700d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10.ERLSFIRPGLRILLIGAGGAS-----RGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG-----ISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRGMLVAQAAHAFLLW-------HGVLPDVEPVIKQLQEELS..................................................................................... 170
2 -6.510d1yksa1 c.37.1.14 (A:187-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  3......KKGMTTVLDFHPGAKTRRFLPQILAECARRRLRTLVL-----APTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVI--IMD-EAHFLDPASIGWAAHRARANESATILATP.................................................................................................................... 137
3 -6.210d2onsa2 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  10  1.........NVKLKVFHAGSLTEP--MKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAK-------------NQIVLAYRNDSRYADEINSQNWYEILKRPDVRFGFSNP.................................................................................................................... 119
4 -6.060d3phha2 c.2.1.0 (A:105-263) automated matches {Helicobacter pylori [TaxId: 85962]}  ali model 3D-neighbors follow..  12  10.....KQKNYQNALILGAGGSA-----KALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGK---------LAYDGFLTPFLSLAKELKTPFQDGKDMLIYQAALSFEKF-------SASQIPYSKAFEVMRSVF...................................................................................... 159
5 -5.910d5hgja_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  4............IVIVLDGSNS-TAFLNDLLERMDIGPKQTQVGIVQYGENVTHEFNLNKSSTEEVLVAAKKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIV-TDGESHDNHRLKKVIQDCEDENIQRIASEPTEK-----HFFNVSDELALVTIVKTLGERI...................................................................................... 190
6 -5.840d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  10..EKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFE----KLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFD---VVAMPVETPFIRYAQARGKQTISGAAVIVLQAVEQFELY............................................................................................................... 148
7 -5.830d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184 {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  71............................................................................................................NIVFDYNNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKGHTELGEGERLVKTLSMK........................................................................................ 135
8 -5.830d2hewf1 b.22.1.1 (F:58-185) Tumor necrosis factor ligand superfamily member 4, OX40L {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  25NEYQTMEVQNNSVVIKCDG------YIIYLKGSFQEVKIDLHFREDHNPISIPMLNDGRRIVFTVVASLAFK---------------------------------DKVYLTVNAPDTLCEHLQINDG-------ELIVVQLTPGY.................................................................................................................. 125
9 -5.670d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]}  ali model 3D-neighbors follow..  43......TYELAESLLKAKELAATQGYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSSHSRGSAIDLTLYRLDTGELVPMGSRFDF----MDERSHHAANGISCNEAQ--NRRRLRSIMENSGFEWW---HYVLRDEPYPNSYFDFPVK......................................................................................... 202
10 -5.600d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  2...........KLQLVAVGTKMPDEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVT-------DIPGKPWDTPQLAAELERWKLDGRDVSLLILSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITH........................................................................................................... 153

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 3 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.