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Query: PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSFSYSQVESKPQDSTEREYDYMIIEGDTIPREFIDLEEVIILNKIKFTSDLERRRYLILRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDILQRSFQRNILDNQPSVLNIDYFEASSKWLast
1 -6.650d1orna1 a.96.1.1 (A:3-214) Endonuclease III {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1....................................................TKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKY-RTPHDYIAVPLEELEQDIRRNIQKLCAMLIDKYNGEVPRDR-DELMKLPGVGRKTAFGVPAIAVDTHVERVSKRL........................ 147
2 -6.470d3wu2b_ f.55.1.1 (B:) automated matches {Thermosynechococcus vulcanus [TaxId: 32053]}  ali model 3D-neighbors follow..  11  308..LAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHA--------VFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKAD-----IPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEIFRTSPRGWFTFAHAVFALLF-HGARTLFRDVFSGIDPELS---PEQVEWGFYQK................ 497
3 -5.890d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  12  42.........................KGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDEIDRLYLNFSDPWPKKRHEKR--RLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKGQVIYRVEAEF........................ 204
4 -5.690d3hdua_ d.38.1.0 (A:) automated matches {Syntrophus aciditrophicus [TaxId: 56780]}  ali model 3D-neighbors follow..  13  1.................................................SKNEEVLFSAVNEIFEEKIPFNKIIGLKVRFISPEQVKLSFEMRDELIGNAIRRML--------------YGGVISSAIDMTAGLAAFMGFQEKMSGKPM---AMIGRLSTMSLHVEYLRPGLGREFVCTGYNVRT........................ 123
5 -5.650d1zt2b1 a.262.1.1 (B:3-209) DNA primase large subunit PriB, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  11  6...................................................................YPFIKSLDDELKKYGGGITLTDLLLNSTTLIDQAKDRIQKTKSGDIRRYAYAEAKQFRSLLHTENEENLLEISKLL.................................................................. 111
6 -5.560d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  6...............................................................LLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG-EVEEMNVCDGNVYVKFRREEDAEKA---VIDLNNRWFN----------GQPIHAELSP........................................ 104
7 -5.500d1uhga_ e.1.1.1 (A:) Ovalbumin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12.......................................FDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPIFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLW 184
8 -5.490d3ipra_ c.54.1.0 (A:) automated matches {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  6..................................................................IATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDGVLVMVDL---LSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQLLGTIAEAAQAIVAQGK................... 127
9 -5.470d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp. [TaxId: 479]}  ali model 3D-neighbors follow..  14  132.................................................................DVETICTGVGISDGELKELIRKHQNDQSAKLFTPVQKQRLTELLEPYRERFIRPDLLIRFQVIDREYVDVTIKNIDDYVSDRIAEGSKARKPGFGTGLNWTYASGSKAKKMQFK.............................. 261
10 -5.420d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  23........................LEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEK-LSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN............................. 186

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 6 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.