current user: public

If you have questions about the server, please let us know.

Query: PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .
# Score Template Links and tools%idFirst MEGHEEVRTGWSRWDSLWPFLLFYCNFLKGVFLLRIAVVDGQGGGIGKHITARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAASPARKFLLPINRSGVEVIGVTPEPLPHLIEALVNRVKFFYQEGGDKDLast
1 -9.310d3cb2a1 c.32.1.0 (A:2-246) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  119....DIIDREADGSDSLEGFVLCH------------SIAGGTGSGLGSYLLERLNDRYPKKLDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTL................................................. 242
2 -8.560d3ryca1 c.32.1.1 (A:1-245) automated matches {Sheep (Ovis aries) [TaxId: 9940]}  ali model 3D-neighbors follow..  13  120....DRIRKLADQCTGLQGFLVFH------------SFGGGTGSGFTSLLMERLSVDYGKKSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL................................................. 242
3 -8.250d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  1.................................MRILVLG-TDEAIGVRIVEALEQRLPDYVEILDGGTAGMNRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVE. 155
4 -8.090d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  1...............................SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTAVTRGQAAVQQLQAEGLSSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNDVCTELLPLIKPQGRVVNVSS......................... 138
5 -7.750d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}  ali model 3D-neighbors follow..  14  1.................................MSIIVISGCATGIGAATRKVLEAA----HQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNV......................................................... 82
6 -7.680d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  1................................MQNVGFI-GWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIV----TCQGGDYTNEIYPKLRES.................................................. 88
7 -7.420d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  10  2....................VLFVCI----------------HNTARSVMAEALFNAMAKSWKAESAGVDETVKRLLAERGLKAKEKPRTVDEVNLDDFDLIV........................................................................ 74
8 -7.190d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}  ali model 3D-neighbors follow..  16  27.............................AMSKRTALLADFLVLRHGKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLC-VGTRFTDTLTAGFTHQL------TPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHA..... 161
9 -7.150d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  20  1...............................QPLNVAVV-GATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDS--FDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP......................................... 100
10 -7.020d2r6ja_ c.2.1.0 (A:) automated matches {Ocimum basilicum [TaxId: 39350]}  ali model 3D-neighbors follow..  15  1..............................GMKSKILIF-GGTGYIGNHMVKGS---LKLGHPTYVFTRPNSSKTTLLDEFQSLGADEHEKLVELMKKVDVVISALAFPQILDQF-----KILEAIKVAGNIKRFLPSD.................................... 107

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.