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Query: PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RFYCHEVVQRWISPDGKVTDMALLRGFLFCYCDVWALGSDMEVRPHNSLYDDVVARSCAYPKMRILPQLRRNGFKGDFHGISPVRLFKALLSDPRIETLMKGGEIEVMKHFLFNTRTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKALast
1 -9.010d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  6  27...................................................................................................................................................................CKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKT-HSYGGLGR--SCLVAACLLLYLSDTISPEQA------IDSLRDLRGSGAIQTIKQYNYLHEFRDKLAAHL.. 176
2 -7.230d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}  ali model 3D-neighbors follow..  10  5.........................................................................................................................................................................................................ALEDHKTRTDNRYEPSLDNLAQQDVAAPGAPEGVTALSDAQYNEANKIERCAGCHGVLRKGATALTPDLTRDLGFDYLQSFITYASPAGMPNWGTSGELSAEQVDLMA-NYLLLDPAA... 125
3 -7.200d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}  ali model 3D-neighbors follow..  11  12..........................................................................................................................................................................................................................................PVTAAPEQVQAGKQLQFCSVCHGMGTISGGLIPDLRQSSDATREHFQQIVLQGALKPLGMPSFDDSLKPEEVEQIKLYVMSREYEDYM 101
4 -6.640d1h32a1 a.3.1.8 (A:1-150) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}  ali model 3D-neighbors follow..  9  52............................................................................................................................................................................................................................................NSGMVFVEEARAVADCHGAVDDGMYGLRAVYKYVESAGKVRTVEQMINACRTSRMGA---PEWDYIGPDMTAMVALIASVSRGMP. 146
5 -6.520d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}  ali model 3D-neighbors follow..  9  1..................................................................................................................................................................PVEVTYKNMRFLIT--HNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGA--LSLVKIKFREEPGCCIAVHCVAGL-----GRAPVLVA------LALIEGGMKYEDAVQFIRQKRRGAFNSKQ-LLYLEKYRPKMRLRF.. 152
6 -6.460d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}  ali model 3D-neighbors follow..  7  4.......................................................................................................................................................................................................................................LLQGVKYDPAKVEAGTMLANCVFCHGVPGVDRGGNI-LGYMDASYIENLPNFVFKGPAMVRGMPDFTGKLSGDDVESLKAFIQGTADAIRP 97
7 -6.320d2hcma1 c.45.1.0 (A:2-158) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  11  74............................................................................................................................................................................................................................................EPTCAAMEAGSCLVYCKNGRSRSAA--CTAYLMRHRG-----HSLDRAFQMVKSARPV----AEPNLGFWAQLQKYEQTLQAQAIL 154
8 -6.140d2f4da_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  98............................................................................................................................................................................................................................................ERAADFIDQGRVLVHCREGYSR--SPTLVIAYLMMRQK----MDVKSALSIVRQNR-----EIGPNDGFLAQLCQLNDRLAKEGK. 177
9 -6.030d1umma_ a.3.1.0 (A:) automated matches {Methylobacterium extorquens}  ali model 3D-neighbors follow..  7  23..........................................................................................................................................................................................................................................LYIDDKSCLRNGESLTSCSGCHGHLAEGKL--------NDNYWTYPSNTTDVGLFATGGANGMMGPHNENLTP-TIAWIRHLYTGPKQ 114
10 -6.020d2j16a_ c.45.1.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  9  51..............................................................................................................................................................................................................................HYRWEHDSQIALDLPSLTSIIHAEKILIHCQCGLSR--SATLIIAYIMKYHN----LSLRHSYDLLKSRAD-----INPSIGLIFQLMEWEVALNAK... 142
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.