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Query: PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSETKERLCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIYRKERYITIQEQDYIRDSFVRAGFSSDLIRYDAMVYMYELQSAMVKSLast
1 -7.140d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  7  29.....................IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQS............................................................................... 85
2 -6.490d1wina1 d.43.2.1 (A:8-137) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  14  55...................................................................................QDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKT 128
3 -6.380d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  11  88.............................................................................QIIDLLEELSSTKDTSTAQDMAKNLEIHHFFDGIYGSSPEAPHKADVIHQALQTHQLAPEQAIIDTKFD........... 166
4 -6.350d2i8ga_ d.107.1.4 (A:) Hypothetical protein DIP2269 {Corynebacterium diphtheriae [TaxId: 1717]}  ali model 3D-neighbors follow..  10  1...VHDSALPFDALPMPPQGREGFEECP-------YLDSQWVADTNGQRMTGQGVDTRFDTPACVFWSYPEAPQATVMVRHMPSEEEAIRVVDWAAPIDTT-EEGAVYAVQKGPVAVSLKAELMAKEAIARLGL....................... 147
5 -6.290d2d4pa1 d.108.1.1 (A:1-130) Hypothetical protein TTHA1254 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  10  40..........................AEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEE--ALKAEGPLVLAVRVLGSR.......................................... 130
6 -6.050d1s4ka1 a.35.1.6 (A:1-119) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  9  5...................................................................LELQALRRIFDMTI----------EECTIYITQDNNSATWQRWEAGDIPISPEIIARLKEMKAR.......................... 58
7 -5.970d2e7pd_ c.47.1.0 (D:) automated matches {Populus tremula [TaxId: 47664]}  ali model 3D-neighbors follow..  13  1........................................DAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELELSDGSQLQSALAHWTGRGTVPNVFIGGKQIEKHQRNELLPLLQDAA........................ 101
8 -5.930d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]}  ali model 3D-neighbors follow..  19  15.............................................................................................FKVQVDPFMGQVAYLRLYRGDSLQSEAGQVRLPHLYVPMGKDLLEVE................. 66
9 -5.830d2z7fi_ g.3.14.0 (I:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  23....................CEMDGQCKRDLKCCMGMCGKSCVS................................................................................................................. 46
10 -5.800d3zita_ c.47.1.0 (A:) automated matches {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  10  6...........................................................AQPDCPPCVIVKEFLKHNNVA--YEEFDVKKDAAARNRLLYDYDSYSTPTVVIDGEVVAGFQIEKLQQLLN........................... 74
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;