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Query: PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKREAQNYIDNKLKPPKAFFEWCFSQIPTYKWSNKKETILASNRKNCSVIEQKLRKNSRLTFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEIIEFDLVNFEQFAEGEHVKVASSDGKMWFGLIPVYGGMSGGPYSMIQLFENDWKEKIRSKSELKYLEIPHLDFKEIETIYKYRVEIEFLQKIKARQLAKEVMYPVTQYTNGSFRKTVDMRTINSKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQNLast
1 -8.290d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  34................................................................................................................................................................................................................................................................................................RNVQKDTEELKSCGIQD---------VFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKT-HSYGGLG-----RSCLVAACLLLYLSDTISPEQAID----SLRDLRGSGAIQTIKQ-YNYLHEFRDKLAAHL..... 176
2 -6.160d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}  ali model 3D-neighbors follow..  9  12.......................................................................................................................................................................................................................................................................................................................................................................PVTAAPEQVQAGKQLQFCSVCHG-----TISGGLIPDLRQSSDATREHFQQIVLQGALKP-MPSFDDSLKPEEVEQIKLYVMSREYEDYMARH 104
3 -5.480d3tdca1 c.14.1.0 (A:1719-2042) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  226........................................................................................................................................................................................................................................................................................................................................................................SLAYEEIVTISLVTCRAIGIGAYLVRIQVENSHIIALNKVLGREVYTSNNQLGGVQIMHYNGVSHITVPDDFEGVILEWLSYM-----PKDN 324
4 -5.320d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  8  24...............................................................................................................................................................................................................................................................................................................GMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLYHVVAGQTSPANVVGTRQTLVTVTGQGN------SLKVGNADVVCG----GVSTANATVYMIDSVL............ 159
5 -5.150d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  18.......................................................................................................................................................................................................................................................................................YIEKDGKPVSAFHD-IPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPSHPETKAVGDNDPIDVLEIGETYTGQVKQVKALIMALLDEGETDWKVIAIDINDPLAPKLNDIEDEKYFPGLLRATNEWFRIYKIPDGKPEN 201
6 -5.140d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  10  4..................................................................................................................................................................................................................................................................................RRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEIFQPH--------------RYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNG------ISGKMIWDSLKSLGKEAYFVEKLPELEK---VISVSENTVFLFVGAGD----------IIYSSRRFVERYQSSK. 151
7 -5.120d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}  ali model 3D-neighbors follow..  10  7........................................................................................................................................................................................................................................................................................................................................EDHKTRTDNRYEPSLDNLAQQDVAAPGAPEGVTALSDAQYNEANKIERCAGCHGVLRKGATGKALTPDLTRDLGFDYLQSFITYASPAGMPNWGTSGELSAEQVDLMA-NYLLLDPAA...... 125
8 -4.970d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C {Haemophilus ducreyi [TaxId: 730]}  ali model 3D-neighbors follow..  14  50.......................................................................................................................................................................................................................................................................................................................................................KEYEKLRDGGTLVQFKVVGAAKCFAFLGKGTTDCKDTDHTVFNLIPTNTGAFLIKDALLGF----CITSHDFDDLKLEP-CGGSVSGRTFSLAYQWG............ 141
9 -4.970d2vcha_ c.87.1.10 (A:) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  10  251..................................................................................................................................................................................................................................................................................SECLKWLDNQPLGSVLYVSF-EQLNELALGLADSEQRF---LWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHGGFLTHC-GWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMKGVRNKMKELKE 439
10 -4.970d1h32a1 a.3.1.8 (A:1-150) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}  ali model 3D-neighbors follow..  6  2.................................................................................................................................................................................................................................................................................................................PDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFE------NSGMVFVEEARAV-ACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTA-MVALIASVSRGMP.... 146
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.