current user: public

If you have questions about the server, please let us know.

Query: PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260
# Score Template Links and tools%idFirst MDPPVCSPWGRFGCYLLLFACPIIFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLKTDRFWQQPRIEDFFLPHTDRQSYAYQAIYASLTPSYMQVSLSEESDTLSIRQTVTETLAEEEKPLAAIFLSPEPLVYRWQSGRFVRQVLast
1 -69.500d2p3pa1 d.383.1.1 (A:66-262) Hypothetical protein PG1388 {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  100  1.................................................................AGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLKTDRFWQQPRIEDFFLPHTDRQSYAYQAIYASLTPSYMQVSLSEESDTLSIRQTVTETLAEEEKPLAAIFLSPEPLVYRWQSGRFVRQ. 197
2 -8.080d6fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  33  34IHPDEC-----IDCALCEPECPA................................................................................................................................................................................................................................................ 51
3 -7.970d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  18  29IDEAKCI-----GCDTCSQYCPTAAIFGEMGEPHSIPHIEACI............................................................................................................................................................................................................................ 66
4 -7.650d2joda1 g.76.1.1 (A:22-122) Pituitary adenylate cyclase-activating polypeptide type I receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  33.....CPGWDNITCWMVLVSCPELFRIFNPDQDMGVVSRN............................................................................................................................................................................................................................... 75
5 -7.300d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  13  72INTLDCM-----GCGNCADICPPKEKALVMQPLDTQRDAQ--------------------------VPNLEYAARIP.......................................................................................................................................................................................... 117
6 -7.220d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  33  34IHPEEC-----IDCGACVPACPV................................................................................................................................................................................................................................................ 51
7 -7.150d4kt0c_ d.58.1.2 (C:) automated matches {Synechocystis sp. [TaxId: 1148]}  ali model 3D-neighbors follow..  18  5KIYDTC-----IGCTQCVRACPLDVLEMVPWDGCKAAQIASSP............................................................................................................................................................................................................................ 42
8 -6.840d3c7bb6 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  29  40VDVEKC-----MYCGNCYTMCP................................................................................................................................................................................................................................................. 56
9 -6.840d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  31  137TVTDTCT-----GCTLCLSVCPIIDCIRMVSRTTPYEPKR............................................................................................................................................................................................................................... 171
10 -6.530d2fgoa_ d.58.1.1 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  16  3KITDDC-----INCDVCEPECPNGAISQGEEIYVID................................................................................................................................................................................................................................... 33

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.