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Query: PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNILILIIGVLVLGLVAALTEIRHSHKRRAAEAKGESLPEEPVRVVPPGCCGMHITCEKDSLLTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFEEILSTLQEEEVPSWIRSLQMRQIQMPISIKEQALFIVSEHRIQHRHDLast
1 -6.360d1ufna1 d.217.1.1 (A:8-88) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  11  1.....................................NDAVDFSPTLPVTCGKAKGTLFQEKLKQGASKKCIQNEAGDW----------LTVKEFLNEGG------RATSKDWKGVIRCNGETLRHLEQKGLLF............ 81
2 -6.090d2i5fa2 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  24..............................................................ILREDPAYLHYYDPAGAEDPLGEEENLFEIITADEVHYFLQAATPKERTEWIKAIQ............................ 100
3 -6.030d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase, amidase domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  93..............................QAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTTILGWMIQTEDTEYSLP..................... 191
4 -5.890d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  63...........................................................RRRQLLLTEGPHLYYVDPVNKVLKGEQELRPEAKNFKTFRTYYLMDPSGNAHKWCRKIQ............................ 131
5 -5.880d1dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  29..................................................................TAENLSWYKDDEVDNLKLRDVEKGFMSSKHIFA-ELACETQEEVDSWKASFLRAGV........................ 108
6 -5.870d1wgxa1 a.4.1.3 (A:8-67) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1......................................................................................DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKH.. 58
7 -5.640d4gosa1 b.1.1.0 (A:35-148) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  22.........................................................CTFEPDIKLSDIVIQWLKEGVLGLHEFKEGKDELSEQDEMFRG--TAVFADQVIVGNASLRLKNVQLTDA................... 91
8 -5.570d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}  ali model 3D-neighbors follow..  12  1......................................................................................GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES.. 58
9 -5.570d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}  ali model 3D-neighbors follow..  14  9.............................KQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFRGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH............................ 98
10 -5.550d1v5pa1 b.55.1.1 (A:8-120) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  31..............................................................ILDTQANCLLWYMDNPQNLAVGAGAGSLQLTYISKVSIALQANDQKDLKDWVEALN............................ 109
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.