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Query: PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503], from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTGIRVTVYALLAMILFSCEHKELCFHHPHMVTLRVDFDWKNAPQADPEGMCVYFYPEEGESPIRFDFAGKDGGSVEIKEGRYRILCYNNDTESLLFRGMEGFDTHEGYTRDGNVFESIYGNGAHYAPPAKGSEDERVVICPDMMWGSCARNVEITELGLSYECISFADKDKVEWIESSEHVITLYPAELICTYTYEVRNVKNMEYMTQACGSLSSMAPSMLFANEELDRECVTVPFETELHLESSKMTGKFYTFGHHEENARPHKLast
1 -8.150d2jnaa1 d.230.6.1 (A:1-96) Hypothetical protein STM0082 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  11  1MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVINVSQSGGQISSPSDLREKL-DAKGGKYYHIIAAREHGPNFEAVAEVYN...................................................................................................................................................................................... 92
2 -7.390d5sv5a_ b.18.1.0 (A:) automated matches {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}  ali model 3D-neighbors follow..  11  34.............................ASAKNIDISVL-----NEYGIGMTWVLHHESDMQNYAAYGQANGNANFNAKPGKYYLYVYKYDNGDGTYE........................................................................................................................................................................ 101
3 -6.850d1nqja_ b.18.1.36 (A:) Class 1 collagenase {Clostridium histolyticum [TaxId: 1498]}  ali model 3D-neighbors follow..  17  30.............................KEEGEVNIELD-----KKDEFGVTWTLHPESNINDRITYGGNKVSNKVKLRPGKYYLLVYKYSGSG............................................................................................................................................................................ 93
4 -6.680d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1...................CENELLKFSYIRTSFDKILLRWEPYWPPDFRDLMLFYKEAPYQNVTEFD-GSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDA.................................................................................................................................. 125
5 -6.480d2mnua_ b.1.2.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  19...................................SIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVPGIDYDISVIT................................................................................................................................................................................. 77
6 -6.400d3rkpa1 b.3.5.0 (A:166-267) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  13  4...................................AVDLIKTGVNEKAMAGAVFSLFKKDGTEVKKELATDANG---GLEYGEYYFQ.................................................................................................................................................................................... 57
7 -6.180d1v86a1 d.15.1.1 (A:8-89) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  5.................................................................................................................................................................................GVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQMYKGLVPEDKTLREIKVTSG-------AKIMVVG.......... 79
8 -6.140d5ikua1 b.18.1.36 (A:773-890) Class 1 collagenase {Clostridium histolyticum [TaxId: 1498]}  ali model 3D-neighbors follow..  14  46.............................KEDGDVTIELP-----YSGSSNFTWLVYKEGDDQNHIASGIDKNNSKVKSTKGRHYVFIYKHDSAS............................................................................................................................................................................ 109
9 -5.910d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  16...................................TMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLPGTEYVVSVSS................................................................................................................................................................................. 74
10 -5.850d2k5wa1 b.40.13.1 (A:2-109) Uncharacterized protein BC2438 {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  9  15................................MQIKGEGTIEKVDGRNLRNYTLPAYDEDGVKKQITFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEISSIEVKSYEEIQKA.......................................................................................................................................................... 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;