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Query: PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg], from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PVCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKYRPVYKDNIAHEDSIVYKESIEFNDSCVYNDSIAYEYSFAMEYIVCPRIYLEELTAYLast
1 -10.500d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}  ali model 3D-neighbors follow..  13  14GILNATISVADINHP-------VTTYKDGDYWRLLVQGTYKVTASARGYDPVTKVDSKGGVQVNFTLSRT........................................................................................................................................................................................... 79
2 -10.400d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}  ali model 3D-neighbors follow..  21  33PLAGQEVVITT-NNGALPNKITEKTDANGVARIAL-DGVTVVTAEVEGQRQSVDTHF........................................................................................................................................................................................................ 91
3 -9.260d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  33PVSNQEVTFTT-TLGKLSN-STEKTDTNGYAKVTL-PGKSLVSARVSD................................................................................................................................................................................................................. 81
4 -9.040d1cwva2 b.1.14.1 (A:597-692) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}  ali model 3D-neighbors follow..  18  37PQAGANVAFDTTL-----NMGVITDHNDGTYSAPL-LGVATVTVKVDG-------AAFSVPSVTVNFT............................................................................................................................................................................................. 96
5 -8.850d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  13PLPNVIVEVQDRKHI-----CPYRTNKYGEYYLLLLPGSYIINVTVPG................................................................................................................................................................................................................. 55
6 -8.440d2g2na_ b.3.4.0 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  15PAADVTVTLEKKADNGWLQLNTAKTDKDGRIK-TATTGDYRVVFKTGDYFKFHINKVNEHYHVPLLLSQ............................................................................................................................................................................................ 102
7 -7.840d1xpna1 b.3.7.1 (A:21-170) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  22  88...................VREATTDQNGRFDFDIPNGTYYISSETEGGTVTKLVTVSGSQPQKVLLTR............................................................................................................................................................................................ 150
8 -7.660d1cwva3 b.1.14.1 (A:693-795) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}  ali model 3D-neighbors follow..  14  40FISGMQGLSFTQNGVP--VSISPITEQPDSYTATV-VGDVTITPQVDT-------LILSTLQKKISL.............................................................................................................................................................................................. 100
9 -7.540d5m0yb1 b.3.2.0 (B:8-102) automated matches {Clostridium thermocellum [TaxId: 203119]}  ali model 3D-neighbors follow..  18  22IKSGFNVKVAGTELS-------TKTDEKGYFEISGDMREFTLEISKRN-YLKRNVTVNGTGKLVVSTEDNP.......................................................................................................................................................................................... 87
10 -6.650d1ti6b1 b.3.5.1 (B:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}  ali model 3D-neighbors follow..  19  14CFEGAKVV--LKSGGK--EVASAETNFFGEFKFDLDNGEYTVEIDADG-KSYSDTVVIDDKSVDL................................................................................................................................................................................................ 74
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205