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Query: PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482], from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYIFRSIHEIINTIFVAKGLLVEMFEKRKVLSFRYSDALALLKEDENRLKILIEKEIIHQNGNFVELDARFLDFFELLLEANEEINTATVEENIEYLHELMDYYLKEKIQSRKESYVRNIKITFQKLARVTIRNIINLQHNIDNAFKHEPTYQIKIAKLQNLDKKRINIQRLIDSTEHLILHEERDFFRQATDEELTRILLELRQELQLSAHSLIRAQQDIINYLNQIKNQVILVEKIRKVKYLQDQFELRARSNLSEIMERERSLLLEGNTQASFKLSPSYLASDEVRPIILKVISNQKYREIVRKNEAGAFSEEDLEAQAMYEEVINLDEVVTAFVQSGAEARWKGEPVSDLFSFLLQYHFHREVDEKERTTFFCQIVSLYESQLEIRNEFGLHNQYEYAKIYLast
1 -5.680d4dnda_ a.47.2.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  6  1...........................................................................DPFFVVRGEV-----QKAVNTARGLYQRWCEQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMVS............................................................................................................................................................................................................................... 104
2 -5.170d2fp1a_ a.130.1.4 (A:) Secreted chorismate mutase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  10  3....SQLAELVDAAAERLEVADPVAAFKWR----AQLPIEDSGRVEQQLAKLGED------ARSQHIDPDYVRVFDDQIRATEAIEYSRFSD----------WKLNPASAPPEPPDLSASRSAIDSLNNRMLSQIWSHWSLLSAPSCAAQLDRAKRDIVRSRHLDSLYQRALTTATQSY.................................................................................................................................................................................................................................. 158
3 -4.970d3uf2a_ a.26.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  9........................................IGSGHLQSLQRLIDS----------QMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLKSCFTKDYEEHDKACVRTFYETP-----LQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECS..................................................................................................................................................................................................................... 145
4 -4.660d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  2...................................................................DRFMDEFFEQVEEIRGFID--KIAENVEEVKRHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE-RSSADLRIRKTQHSTLSRKFVEVMSEYNATQS................................................................................................................................................................................................................................... 114
5 -4.450d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors follow..  12  7..............................................................................................................................................................................................................AHVIENLLLGTPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK............................................................................................................................................... 62
6 -4.420d2d4ua1 a.24.2.0 (A:25-187) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  6.............................................................................................FNALKNCKENFTVLQTIRQQQSTLNGSWVALLQTRNTLNRAGIRYMMD------------------QNNIGSGSTVAELMESASISLKQAEKNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQ................................................................................................................................................................... 136
7 -4.340d3d32a2 d.15.1.3 (A:3-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1.............................................................................................................................................MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKIGDLDKKKYLVPSDLTVGQFYFLIRKRIH------LRAEDALFFFVNNV................................................................................................................................................................................. 83
8 -4.200d1h8pa1 g.14.1.2 (A:22-67) PDC-109, collagen-binding type II domain {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  13  4.................................................................................................................................................................................................................................................................................................................................................................VFPFVYRNRKHFDCTVHGSLFPWCSLDADYVGRWKY................ 39
9 -4.170d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  1...................................................................................................................................................NDRQYWIKRPTAREFDDCCNEFWMVSTYVVKGLARNEILFAIDHLNEIVRPNLLRM----KGYSFSMGKNYKFMKRYLSN-----------KEWEELMSTYSVNGYQEMWKSLFTCYALFRKYSKAVSEGLAYKY-YDEGITKYTEGIYCS........................................................................................................... 145
10 -4.160d5ts9a_ a.130.1.0 (A:) automated matches {Paraburkholderia phymatum [TaxId: 391038]}  ali model 3D-neighbors follow..  9  2.AQQDAFVPLVRSMADRLNTADQVALSKWD----TGQPVYDGQREAQVIANAATM------ASEYGLTAEDANIFSDQVEANKEVQYALLNNWRRQ---------GDAPATPRQSLAGVIRPILDKLQASIMQNLQSVAPLRSIADCHALVASAVGQVAEQASLDVLHRAALDRAVARICVK............................................................................................................................................................................................................................... 164
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.