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current user: public |
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Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . | |||||||
# | Score | Template | Links and tools | %id | First | MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAP | Last |
1 | -7.650 | d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]} | ali model 3D-neighbors follow.. | 12 | 8 | ................................................................................................................................QFLDAL-----WLEKNLAENTLNAYRRDLSMMVEWLHHRLTLATAQSDDLQALLAERLEG. | 63 |
2 | -7.210 | d2rmra_ a.59.1.1 (A:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} | ali model 3D-neighbors follow.. | 10 | 9 | ..................................................................................................................................LSYLDQVKLQFGSQPQ-----VYNDFLDIMKEFKSQSIDTPGVHPDLIMGFNTFL---P | 69 |
3 | -6.340 | d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} | ali model 3D-neighbors follow.. | 11 | 1 | ..........................................................................................................................SDEVRKNLMDMF-----RDRQAFSEHTWKMLLSVCRSWAAWKLNNRKWFPAEPEDVRDYLLYLQAR. | 62 |
4 | -5.990 | d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} | ali model 3D-neighbors follow.. | 16 | 12 | ................................................................................................................................HAINYVNKIKNRFQGQ------DIYKAFLEILHTYQKEQRNAKEAGEDLLSEFGQFL---P | 87 |
5 | -5.930 | d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Nostoc sp. PCC 7120 [TaxId: 103690]} | ali model 3D-neighbors follow.. | 11 | 22 | .................................................................................................................................FWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDWMVTTP | 81 |
6 | -5.860 | d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | ali model 3D-neighbors follow.. | 4 | 3 | .............................................................................................................................DDADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKTFDETKK... | 71 |
7 | -5.620 | d4lzda1 a.60.6.0 (A:137-230) automated matches {Human (Homo sapiens) [TaxId: 9606]} | ali model 3D-neighbors follow.. | 11 | 17 | ..............................................................................................................................NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQFGEHSSRVVQELLEH.. | 83 |
8 | -5.620 | d1z8ua_ a.7.11.1 (A:) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]} | ali model 3D-neighbors follow.. | 22 | 47 | .................................................................................................................................YINYYRQQVTGEPQERD-----------KALQELRQE---LNTLANPFLAKYRDFLKS.. | 90 |
9 | -5.580 | d4i2aa1 a.60.6.0 (A:149-242) automated matches {Mouse (Mus musculus) [TaxId: 10090]} | ali model 3D-neighbors follow.. | 9 | 17 | ..............................................................................................................................NQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLMKDTEGIPCLGDKVKSIIEGIIED.. | 83 |
10 | -5.560 | d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | ali model 3D-neighbors follow.. | 12 | 34 | .............................................................................................................................TIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAP | 97 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Alonso A, Sasin J, Bottini N, Friedberg I, Friedberg I, Osterman A, Godzik A., Hunter T, Dixon J, Mustelin T. Protein tyrosine phosphatases in the human genome. Cell. 2004 Jun 11;117(6):699-711. Review. |