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Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPLast
1 -7.650d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  8................................................................................................................................QFLDAL-----WLEKNLAENTLNAYRRDLSMMVEWLHHRLTLATAQSDDLQALLAERLEG. 63
2 -7.210d2rmra_ a.59.1.1 (A:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  9..................................................................................................................................LSYLDQVKLQFGSQPQ-----VYNDFLDIMKEFKSQSIDTPGVHPDLIMGFNTFL---P 69
3 -6.340d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}  ali model 3D-neighbors follow..  11  1..........................................................................................................................SDEVRKNLMDMF-----RDRQAFSEHTWKMLLSVCRSWAAWKLNNRKWFPAEPEDVRDYLLYLQAR. 62
4 -5.990d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  12................................................................................................................................HAINYVNKIKNRFQGQ------DIYKAFLEILHTYQKEQRNAKEAGEDLLSEFGQFL---P 87
5 -5.930d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Nostoc sp. PCC 7120 [TaxId: 103690]}  ali model 3D-neighbors follow..  11  22.................................................................................................................................FWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDWMVTTP 81
6 -5.860d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  4  3.............................................................................................................................DDADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKTFDETKK... 71
7 -5.620d4lzda1 a.60.6.0 (A:137-230) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  17..............................................................................................................................NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQFGEHSSRVVQELLEH.. 83
8 -5.620d1z8ua_ a.7.11.1 (A:) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  47.................................................................................................................................YINYYRQQVTGEPQERD-----------KALQELRQE---LNTLANPFLAKYRDFLKS.. 90
9 -5.580d4i2aa1 a.60.6.0 (A:149-242) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  9  17..............................................................................................................................NQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLMKDTEGIPCLGDKVKSIIEGIIED.. 83
10 -5.560d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}  ali model 3D-neighbors follow..  12  34.............................................................................................................................TIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAP 97
FFAS is supported by the NIH grant R01-GM087218-01
1 4 1 6 7 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.