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Query: PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNIEQAYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCYEVEYQNGTVSFLGEGDLCVTDLSRQVFVSSRLPLRKYRGVTLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYWIKTMELLast
1 -9.330d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  13........................................LVAGLTPIEANGYLDFFIDRPLGMKGYI-LNLTIRGQGVVKN-QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRME................. 159
2 -8.150d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  19.......................................KLVNTEHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNI-VYVPFNVKMLIQNINSDILEFFVVK..................................................................... 99
3 -8.130d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  24  38....................................................................ETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNL........................................................................ 87
4 -7.770d2veca_ b.82.1.0 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  34............................................LRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGAMGSLQLRQQVWLHHI-GESANFQLHGPRAYLQS..... 179
5 -7.730d3rnsa1 b.82.1.0 (A:1-103) automated matches {Leptotrichia buccalis [TaxId: 523794]}  ali model 3D-neighbors follow..  15  1MVKIEVAKPINFNRLITSKEAEVVSMRILNQPNSYISLFSLAKDEEITAEAMLGN-------------RYYYCFNGNGEIFI-ENNKKTISNGDFLE............................................................................................. 83
6 -7.080d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  10  1............MSYINNIEHAKVLDLTQMIEQDQMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-DQETYRVAEGQTIV............................................................................................. 86
7 -6.840d4leja1 b.82.1.0 (A:65-231) automated matches {Pinus koraiensis [TaxId: 88728]}  ali model 3D-neighbors follow..  11  7SDRFRIRASSEAGEIRALPNFGEVSELLEGISRYRVTCIEMKPNTVMLPHYIDAK-------------WILYVTGGRGYIAYNELVKRKLEEGDVFGVPSGHTFYLVNNDDHNSLRIASLLRTESTMRGEYEPFYVAGGRNPETVYSAFSDD---VLEAAFNTDVQKLEHIFG................. 166
8 -6.830d3hqxa_ b.82.1.0 (A:) automated matches {Acinetobacter sp. [TaxId: 62977]}  ali model 3D-neighbors follow..  10  19...............................GLCISHTVQFEDGTKKTLGVILPTEQPLTFETHVP--ERMEIISGECRVKIADSTEELFRAGQSFY............................................................................................. 83
9 -6.830d2ozja_ b.82.1.0 (A:) automated matches {Desulfitobacterium hafniense [TaxId: 272564]}  ali model 3D-neighbors follow..  1............MARLKNLPQERPLPLASEARENQVLSMALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITF-DDQKIDLVPEDVLM............................................................................................. 86
10 -6.590d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  14  5................................DLNMKIHTLFPGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-DEQWHELQQGEHIRFFSD......................................................................................... 77

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;