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Query: PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLSQQSLSTIESAIQKAAGKYVCGCDQTAVTDIHLQPDQTSGQLTIYNDDDEELANVMIEEWATYDGDDFMENVKPNLKSTLCRMKDAGDFDKVTILKPYSFVLVDEDKETVAELLLIDDDTLLVDDELLKGLDKELDEFLKNLLELast
1 -6.460d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}  ali model 3D-neighbors follow..  11  48.......................................LSDGATNIQLRGPEYYNIMPVWEWDKIPGITSRDYLTDRPLTKLWGEQGSNDF-SDGVYGASAYALDYDSLQAKKAWFFFDKEIVCLGAGINSNAPENITTTLNQ... 155
2 -5.710d1n4wa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Streptomyces sp. [TaxId: 1931]}  ali model 3D-neighbors follow..  8  52..........................ETWVSLYLAITKNPQRGTFVYDAATDRAKLN-----WTRDQNAPAVNAAKALFDRINKANGTI.......................................................... 109
3 -5.410d4whsa_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]}  ali model 3D-neighbors follow..  14  54.............................................QVYDGNGHLVRDSFLEVWQADANGEYQDAYNLNSFGRTATTFDAGEW-TLHTVKPISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQP.......... 164
4 -5.150d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  21.............................................QFYDDNFPMEIRHLLAQWIETQDTILLQNLLIQLDEQLGRVSKEKNLLLIHNLKRIRKVLQGKFHGNPMHVAVVISNCLREERRILAAANMPI......... 124
5 -5.140d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}  ali model 3D-neighbors follow..  12  62...............................NTISVIVGGSCGYVRLADKNPLELDLKFAYYALKSQQERIEALAFGTTIQNIRI----SDLKELEIPFT-----NKNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLFS 183
6 -5.090d1x1ia3 b.30.5.0 (A:387-659) automated matches {Bacillus sp. [TaxId: 84635]}  ali model 3D-neighbors follow..  7  47.......................................TGAGATYLYNQDLAQYSEDYTVDAYRIPGTTVASGTPIASGTGTSSWTGGVSLAGQYGASGMDLSYGAYNLSARKSWFMFDDEIVALGSGISSTAGIPIETVVDN... 153
7 -5.060d2xg5a1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  1...........................AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGA--SMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQALQTKIKLFYR.... 116
8 -5.040d3f42a1 d.222.1.0 (A:1-92) automated matches {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  11  24..............................NKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVEEN.......................................................... 82
9 -4.990d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  8................................................................................................................IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLK 42
10 -4.890d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}  ali model 3D-neighbors follow..  16  38..............................................LSRNKNKEVLQRDLESEFSIKS--------STATVLLQRMEIKKLLYRKV-SRQKCLKLTKKANKLETIILSYMDS---DQSQMTSGLNKEEVVFLEKILK 130
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;