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Query: PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;, from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKVFLIVSVACNVWFLLMLLSDRITETKFVRFLKGAAGLWRSLGTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEIRNNLast
1 -5.160d5em0a1 d.110.1.1 (A:2-133) automated matches {Artemisia vulgaris [TaxId: 4220]}  ali model 3D-neighbors follow..  10  44...................................................................................................................................KPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKKGAGGICIKKTGQAMVFGIYDEPVAPGQCNMVVERLGDYLLDQ........................... 130
2 -5.140d2hhpa2 d.218.1.3 (A:4-201) Poly(A) polymerase, PAP, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  5........................................................................................................................................................GIT--------GPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYDID.. 99
3 -5.140d1n2xa1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  24  1......................................................................................................................................................NRGFTFEREEPL-----DMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKI................................. 57
4 -5.120d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  2.......................................................................................................................................................AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGRSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEID.. 99
5 -5.020d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  75.........................................................................................................................................................LSFEDFLDLLSVFSDTATPDIKSHYAFR-IFDFDDDGTLN-----------REDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR. 153
6 -5.020d2gmya1 a.152.1.3 (A:2-148) Hypothetical protein Atu0492 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  16  60......................................................................................................................................................HDGLSEQWINLMSVWRESPVYTEQERAGWVDAVTKIAETGAPDDAFETLRAHFSDEEIVKIT................................. 123
7 -4.850d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  22..............................................................EDVIHDTSF---------QPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDPDAPSKTDHKWSEECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKW 200
8 -4.760d4f2da2 b.43.2.0 (A:329-498) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  125.....................................................................................................................................................FSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGF.................................................. 170
9 -4.760d1l5ja1 a.118.15.1 (A:1-160) Aconitase B, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  22.........................................................................................................................................................LDANQMAALVELLKNPPAGEEEPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALSHTLDNFYDVEEKAKAGNEYAKQVMQSWADAEW 155
10 -4.570d1ueqa1 b.36.1.1 (A:8-118) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  28....................................................................................................................................................TIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANS................. 111

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24