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Query: PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete), from HGM_OVER

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTKLVAVIALIFCAFMAEASKVEGNGNIITKEISVDNYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSVLast
1 -5.970d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  2...................................................................................................QLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEV--AAMTSKGQGQVSASTISSGV.... 104
2 -5.920d3llpa4 b.42.5.1 (A:383-493) Fascin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  21.............................................................................TLDANRSSYDVFQLEFNDGAYNIKDSTG-----------------KYWTVGSDSAVTSSGD-TPVDFFFEFCDYNKVAIKVGGR-----LKGDHAGVLKASAETVDPAS...................... 107
3 -5.860d5jowa2 b.29.1.0 (A:323-522) automated matches {Bacteroides ovatus [TaxId: 411476]}  ali model 3D-neighbors follow..  8  5....................................IDFKEGKLSPEWIHLQNPEAKNYIFTKDGKLRLIATPVTLSDWKSPTFVALRQEHFDMEASAPVVLQKAGVNDEAGISVFMEFHSHYDLFVRQDKD-YKLGEITHYAKEVSLPTDGEVELVVKSDINYYYFGYKVNGIHDLGKMNTRYLSTETAGG................ 168
4 -5.530d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  7  47.................................................................ELSIKTEATQGLILWSGKG--DYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQR----------EGSLQVGNEAPITGSSPLGATQLDTDLGGMERLSVAHKLPKAYSTGFIGCRDVIVDRQELHL.... 182
5 -5.410d3irga1 b.1.1.0 (A:3-99) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  12.................................................................DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQD-GGLYTLSLGNEFGSDSATVNIH........................................................... 94
6 -5.370d2vn6a_ b.2.2.2 (A:) Cohesin domain {Clostridium cellulolyticum [TaxId: 1521]}  ali model 3D-neighbors follow..  5  16...............................................................VGTANGKPGDTVTVPVTFAD------MKNVGTCNFYLGYDASL----------LEVVSVDAGPIVKNAAVNFSSSASNGTISFLFLDNTDELITADGVFANIKFKLKSVTAKTTTPVTFKDGGAFGDGTMSKIASVTKTNGSVTI 149
7 -5.350d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]}  ali model 3D-neighbors follow..  10  54.................................................................................................................NVVIGAPAADGVHCYGDCTITNVIWEDVGEDALTLKSSGTVNISGGAKAYDKVFQINAAGTINIRNFRADDIGKLVRQNGGTTYKVVMNVENCNI 150
8 -5.350d2ozna1 b.2.2.2 (A:774-906) O-GlcNAcase NagJ {Clostridium perfringens [TaxId: 1502]}  ali model 3D-neighbors follow..  8  2........................................................................VTGSVSLEALEEVQVGENLEVG---VGIDELVNAEAFAYDFTLNYDENAFEYVEAIDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKAEGSNLSVT----NSSVGDGEGLVHEIAGTEKTVNI 131
9 -5.250d1cwva4 b.1.14.1 (A:796-886) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}  ali model 3D-neighbors follow..  10  1.......................................................................................................................PTLTGILVNGTDKGFPKTIFKNATFQLQMDNDVANNTQYEWSSSFTPVSVNDQGQVTITY----------QTYSEVAVTAKSKK..... 79
10 -5.210d2e7ha1 b.1.2.0 (A:8-103) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  2.............................................................................................................PAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQL..... 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;