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current user: public |
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Query: HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 | |||||||
# | Score | Template | Links and tools | %id | First | MKEHKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNLYADRTLWNTMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHNGILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVTKLLKYANPLSENGGESLMRGQITELSFGSSCWQCSS | Last |
1 | -19.900 | [K] COG5340 Predicted transcriptional regulator | ali follow.. | 14 | 45 | .......................APNTAREIASRLTEKGWLDRLLPGRYLIIPL-AAGEEAVYTTHEYLIASHVAEPMYIGYYSALSHHGL-TEQVPRTVYVVTPTRAQSREIHGVPYRVATVTEREPTSIEGVNVADLAKTLVDCADHPEYCG-------------GIRELATAMVAADDQACSWATVGEYLQRLDNGAATKRIVYLADQLSIDLPTRE... | 233 |
2 | -6.110 | [I] COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase | ali follow.. | 6 | 61 | ........................DMSGIRGVDYIAKKGLLKKILAGSYPSGPSSAEPPLIWQMITNNEIPAYNIPSGILFDMHREAAARRPGVLTKVGLDTFVDPKRQGTAMNDKAREAPVV---KRVSFEGEDWLYFPAIAPQVAIIRATTADERGNLTYEHEGATLGGLDQALAARNNGGIVIAQVKRIAREGTLKPHDVRVPGVLVDYIVVDP...... | 250 |
3 | -5.360 | [QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein | ali follow.. | 7 | 5 | .................................................................................................................................VLDPDKEESTMEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGG---DVAACKAATDAGAAAAQRIGELVSVHVI-----PRPHGDLEE | 98 |
4 | -5.200 | [K] COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon | ali follow.. | 8 | 1 | .....................................................................................................................................MRWETRREKIVSLLTES-REPLTIEEIAYMVGEDDKSKIIEDLEHIAKTLRREGKTLLMEPARCNKCGYVFKSLRVKPPSIQPPRFTIRE | 98 |
5 | -5.190 | [R] COG0714 MoxR-like ATPases | ali follow.. | 12 | 6 | .............................................................SVLTQNLSQTIVGKDEAIRLVLVALLSGGHALLEDVPGVGKTLLAKSLARSINGKFQRVQCTPDLLPTDITGTNIWNPSSREFEFLPGPAFANILLADEINRATPRTQAALLEVMEEKQVTVDGETRLVPFFVIATQNPIEY-------QGTFPLPEAQLD. | 161 |
6 | -4.710 | [H] COG0502 Biotin synthase and related enzymes | ali follow.. | 11 | 124 | ....EKVTEIIKAVKSLGLETCGTFGLLQDGMAEDLKEAGLDYYNHNLDTAPEHYAEVIGTRRFDDRLSTLGKVRKAGL--KVCCGGIVGMNETRKERAGLIASLANLDPQPESVPINQLVKVEGTPLADAEELDWTEFVRTIA-VARITMPKSYVRLSAGRSG--MTEEMQAMCFMAGANSIFYGDKLLVTDNPEEDG-----DQLLMAKLDLEPETAENKK | 332 |
7 | -4.450 | [P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid | ali follow.. | 6 | 1 | MPAPHGLSPLSKAFLMRRAFQRRILPHSLAMALSLPLAGYVQAQEVEFDIPPQ---ALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITE-LLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTPGTIATATRLVLTPRETPQSITVVTRQNMDD------FGLNNIDDVMRHTPGITVSAYDT-DRNNYYARGFSINNFQYD. | 220 |
8 | -4.310 | [K] COG1675 Transcription initiation factor IIE, alpha subunit | ali follow.. | 10 | 9 | ..........................................................................................................................................VEELLNELVGRAAGEVGLILFSLGIEGEFTDDQLSLELGIEINEIRKAIGLADYVRRRDDETGWME................... | 80 |
9 | -4.300 | [A] KOG3045 Predicted RNA methylase involved in rRNA processing | ali follow.. | 10 | 116 | .KLKPELAQAALEAMEATSSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSR-KAEALFRKDSSAFEAYHAGYRQQVEKWPINPLNRIIKTIKKIPKTAIIGDFGCGEGK----------LAQSVPNKVYSMDLVAARSDIINITDTPLQAR--TLDVAVYCLSLMGTDLNEFFLEANR-VLKLHGTVYIAEIQSRFQDVREFVRCLNACGFDLNKKDVAV | 325 |
10 | -4.260 | [T] KOG2052 Activin A type IB receptor, serine/threonine protein kinase | ali follow.. | 11 | 265 | ..............................TLIECIGRGKYGEVWRGHWHGESIAVKIFFSRDEESWKRE-TEIYSTILLRHENILGFIGSDMTSRNSCTQLWLMTHYYPLGSLFDHLNRNALSHNDMVWINGLV-KQGKPAMADLKSKNINGSCVIADFGLAVTHSHVTGQLDLGNNPKVGTKRAPEVLD--ESIDLECFEALRRTDIYAFGLVLWEV.... | 470 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |