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Query: HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKEHKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNLYADRTLWNTMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHNGILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVTKLLKYANPLSENGGESLMRGQITELSFGSSCWQCSSLast
1 -19.900[K] COG5340 Predicted transcriptional regulator  ali follow..  14  45.......................APNTAREIASRLTEKGWLDRLLPGRYLIIPL-AAGEEAVYTTHEYLIASHVAEPMYIGYYSALSHHGL-TEQVPRTVYVVTPTRAQSREIHGVPYRVATVTEREPTSIEGVNVADLAKTLVDCADHPEYCG-------------GIRELATAMVAADDQACSWATVGEYLQRLDNGAATKRIVYLADQLSIDLPTRE... 233
2 -6.110[I] COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase  ali follow..  61........................DMSGIRGVDYIAKKGLLKKILAGSYPSGPSSAEPPLIWQMITNNEIPAYNIPSGILFDMHREAAARRPGVLTKVGLDTFVDPKRQGTAMNDKAREAPVV---KRVSFEGEDWLYFPAIAPQVAIIRATTADERGNLTYEHEGATLGGLDQALAARNNGGIVIAQVKRIAREGTLKPHDVRVPGVLVDYIVVDP...... 250
3 -5.360[QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein  ali follow..  5.................................................................................................................................VLDPDKEESTMEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGG---DVAACKAATDAGAAAAQRIGELVSVHVI-----PRPHGDLEE 98
4 -5.200[K] COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon  ali follow..  1.....................................................................................................................................MRWETRREKIVSLLTES-REPLTIEEIAYMVGEDDKSKIIEDLEHIAKTLRREGKTLLMEPARCNKCGYVFKSLRVKPPSIQPPRFTIRE 98
5 -5.190[R] COG0714 MoxR-like ATPases  ali follow..  12  6.............................................................SVLTQNLSQTIVGKDEAIRLVLVALLSGGHALLEDVPGVGKTLLAKSLARSINGKFQRVQCTPDLLPTDITGTNIWNPSSREFEFLPGPAFANILLADEINRATPRTQAALLEVMEEKQVTVDGETRLVPFFVIATQNPIEY-------QGTFPLPEAQLD. 161
6 -4.710[H] COG0502 Biotin synthase and related enzymes  ali follow..  11  124....EKVTEIIKAVKSLGLETCGTFGLLQDGMAEDLKEAGLDYYNHNLDTAPEHYAEVIGTRRFDDRLSTLGKVRKAGL--KVCCGGIVGMNETRKERAGLIASLANLDPQPESVPINQLVKVEGTPLADAEELDWTEFVRTIA-VARITMPKSYVRLSAGRSG--MTEEMQAMCFMAGANSIFYGDKLLVTDNPEEDG-----DQLLMAKLDLEPETAENKK 332
7 -4.450[P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid  ali follow..  1MPAPHGLSPLSKAFLMRRAFQRRILPHSLAMALSLPLAGYVQAQEVEFDIPPQ---ALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITE-LLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTPGTIATATRLVLTPRETPQSITVVTRQNMDD------FGLNNIDDVMRHTPGITVSAYDT-DRNNYYARGFSINNFQYD. 220
8 -4.310[K] COG1675 Transcription initiation factor IIE, alpha subunit  ali follow..  10  9..........................................................................................................................................VEELLNELVGRAAGEVGLILFSLGIEGEFTDDQLSLELGIEINEIRKAIGLADYVRRRDDETGWME................... 80
9 -4.300[A] KOG3045 Predicted RNA methylase involved in rRNA processing  ali follow..  10  116.KLKPELAQAALEAMEATSSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSR-KAEALFRKDSSAFEAYHAGYRQQVEKWPINPLNRIIKTIKKIPKTAIIGDFGCGEGK----------LAQSVPNKVYSMDLVAARSDIINITDTPLQAR--TLDVAVYCLSLMGTDLNEFFLEANR-VLKLHGTVYIAEIQSRFQDVREFVRCLNACGFDLNKKDVAV 325
10 -4.260[T] KOG2052 Activin A type IB receptor, serine/threonine protein kinase  ali follow..  11  265..............................TLIECIGRGKYGEVWRGHWHGESIAVKIFFSRDEESWKRE-TEIYSTILLRHENILGFIGSDMTSRNSCTQLWLMTHYYPLGSLFDHLNRNALSHNDMVWINGLV-KQGKPAMADLKSKNINGSCVIADFGLAVTHSHVTGQLDLGNNPKVGTKRAPEVLD--ESIDLECFEALRRTDIYAFGLVLWEV.... 470

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.