current user: public

If you have questions about the server, please let us know.

Query: HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170
# Score Template Links and tools%idFirst NQDSWQKWNAEYEFRYQLMHGLISLRAALGMDYCDSRAADYHHTHCNLYAVVNAQAAYKCMALTFNLRTHRPTLYGETLALGEDLHDIALTYFKKRFSLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKGNKLast
1 -11.200[M] COG4571 Outer membrane protease  ali follow..  123ATNVNHANEYDLNVKGWLLDENYKAGITAGYQETRFSVIGYNQRFSMPYIGLAGQYRINDFELNALFKFRDLTFREKTSGSRYYGTVINAGYYTPNAKVFAEFT---GGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF........................... 312
2 -10.800[M] COG3047 Outer membrane protein W  ali follow..  50SFKVDNNTQLGLTFSYL-ITDNIGVELLAATPFNHKVGLAGVGTIAD-YLGIGLNYTKFFDEKFNATGSDIGLTNLSVKDSWGVAGQAGMDYVSENWMLNMSV-----WWMNIESDVKFNLAGEEHSINTRLAPWVFMFGAGYRF........................... 211
3 -7.920[P] COG1629 Outer membrane receptor proteins, mostly Fe transport  ali follow..  10  682NAASSEAWGFEFEPSFKVTDN-LETFASLGYVHTEFKDFNDLNLGNKWSLGLGARYTFDGVYVGADAKYTSSYLARHDYLKSRWIVNLQAGYKTERWEINAFAQNLLDEKYFV--------YNDNDIAATLGERRSVGLNMKVKF........................... 833
4 -7.620[P] COG4772 Outer membrane receptor for Fe3+-dicitrate  ali follow..  12  643RPINGYSQGVELELYYRPIRG-LQFHAAFNYIDTRVTSHGPLTDLNG-QFIFDARYNWRKTTIGISSYFYSRAYSGISNSAWYWVWNIQVSQIRHRVTGSLQINNIFNMKY------YFTGIGSSPAGLQPAPGRSVTAYLNYTF........................... 841
5 -7.470[M] COG3637 Opacity protein and related surface antigens  ali follow..  87YGKLKGGFSLGGGVGYK-INDRLRADVTADYWFKSNFNSTEVSKMSALLLLANAYVDIGTWHGITPYVGAGIGGARVKWDTVYDPNTAETNPGASNYALMAGASYCLTDKIILDRMFEWDASSAGPGFDRGINTHEVRGGLRYQFG.......................... 255
6 -6.940[C] KOG4326 Mitochondrial F1F0-ATP synthase, subunit e  ali follow..  15  17......................................................................................................................................SALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDEL 54
7 -6.930[P] KOG3126 Porin/voltage-dependent anion-selective channel protein  ali follow..  95.......LKLSLDTILVPNTGKKSGELKASYKWDCFSVGNVDLDFSGPTIYGWAVLVFEGWLAGYQMSF-------DTAKSKLSQNNFALGYEAADFQLHTHVTDGTEFGGSIYQKVNGIEMSINLAWTAGVTTPILALLLNPSTRS--QIDPLSALIDGNNFSAGGHKVG. 250
8 -6.210[S] COG5338 Uncharacterized protein conserved in bacteria  ali follow..  270RLANISGPSINAMVNWSPLRTDMRFFARTMVDTSTTPGVAGSLQHF---ASLDVTRRVANLSFNGKLDANIRQNKDGTGTDYTLGAEIGATYWLNR-MVAIDARLRHEFQT-------------SQVADREYQSNSIYVGMKFQ............................ 398
9 -6.060[I] COG2067 Long-chain fatty acid transport protein  ali follow..  279....NTQFAVHYSVQWIGWSAFDKIEFRNLVTSRSSVGALTKGSQDGWHYSIGGTYYLNSWTLRAGYMYDTSAQDSRTSISVPDSLSAGFTYNDDKSNVDFGFTYLMGKDVAVSENDAGSKLTAT----THADAILLGLQYSRTF........................... 428
10 -5.910[M] COG3137 Putative salt-induced outer membrane protein  ali follow..  12  129....RERDVLTAGYGRQFLNGSFRFEFGPGVRYDKYTDNA-SETQPLGYASGAYAWQLTD--------TQGVSVFGAEDTTLNSESALNVAIN-EHFGLKVAYNVTWNSEPPESAPEHTD--------------RRTTLSLGYSM........................... 252

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.